Kozloski J, Wagner J. (2011). An Ultrascalable Solution to Large-scale Neural Tissue Simulation. Frontiers in neuroinformatics. 5 [PubMed]

See more from authors: Kozloski J · Wagner J

References and models cited by this paper

Achard P, De Schutter E. (2006). Complex parameter landscape for a complex neuron model. PLoS computational biology. 2 [PubMed]

Al-fares M, Loukissas A, Vahdat A. (2008). A scalable, commodity data center network architecture SIGCOMM ’08: Proceedings of the ACM SIGCOMM 2008 Conference on Data Communication.

Anastassiou CA, Perin R, Markram H, Koch C. (2011). Ephaptic coupling of cortical neurons. Nature neuroscience. 14 [PubMed]

Ascoli GA, Atkeson JC. (2005). Incorporating anatomically realistic cellular-level connectivity in neural network models of the rat hippocampus. Bio Systems. 79 [PubMed]

Ascoli GA, Donohue DE, Halavi M. (2007). NeuroMorpho.Org: a central resource for neuronal morphologies. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

Bower JM, Beeman D. (1998). The Book Of Genesis: Exploring Realistic Neural Models With The General Neural Simulation System.

Braitenberg V, Schuz A. (1998). Cortex Statistics and Geometry of Neuronal Connectivity 2nd ed.

Brette R et al. (2007). Simulation of networks of spiking neurons: a review of tools and strategies. Journal of computational neuroscience. 23 [PubMed]

Bruce GH, Peaceman DW, Rachford HH, Rice JD. (1953). Calculations of unsteady-state gas flow through porous media Trans Am Inst Mining Metallurgical Petroleum Eng. 198

Chklovskii DB. (2004). Synaptic connectivity and neuronal morphology: two sides of the same coin. Neuron. 43 [PubMed]

Church AJ, Andrew RD. (2005). Spreading depression expands traumatic injury in neocortical brain slices. Journal of neurotrauma. 22 [PubMed]

Cooley JW, Dodge FA. (1966). Digital computer solutions for excitation and propagation of the nerve impulse. Biophysical journal. 6 [PubMed]

De Schutter E, Bower JM. (1994). An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice. Journal of neurophysiology. 71 [PubMed]

De Schutter E, Bower JM. (1994). An active membrane model of the cerebellar Purkinje cell II. Simulation of synaptic responses. Journal of neurophysiology. 71 [PubMed]

De Schutter E, Bower JM. (1994). Simulated responses of cerebellar Purkinje cells are independent of the dendritic location of granule cell synaptic inputs. Proceedings of the National Academy of Sciences of the United States of America. 91 [PubMed]

Druckmann S et al. (2007). A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Frontiers in neuroscience. 1 [PubMed]

Druckmann S et al. (2008). Evaluating automated parameter constraining procedures of neuron models by experimental and surrogate data. Biological cybernetics. 99 [PubMed]

Eisenstein M. (2009). Neural circuits: Putting neurons on the map. Nature. 461 [PubMed]

Evers JF, Schmitt S, Sibila M, Duch C. (2005). Progress in functional neuroanatomy: precise automatic geometric reconstruction of neuronal morphology from confocal image stacks. Journal of neurophysiology. 93 [PubMed]

Goddard NH, Hood G. (1998). Large-scale simulation using parallel genesis The Book of GENESIS, 2nd Edn.

HODGKIN AL, HUXLEY AF. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of physiology. 117 [PubMed]

Hines M. (1984). Efficient computation of branched nerve equations. International journal of bio-medical computing. 15 [PubMed]

Hines M. (1993). NEURON--a program for simulation of nerve equations. Neural Systems: Analysis And Modeling.

Hines M, Chen D, Kumar S, Heidelberger P. (2010). Optimization of applications with non-blocking neighborhood collectives via multisends on the blue gene/p supercomputer Proceedings IEEE International Parallel & Distributed Processing (IPDPS) Symposium, Atlanta, GA.

Hines ML, Carnevale NT. (1997). The NEURON simulation environment. Neural computation. 9 [PubMed]

Hines ML, Eichner H, Schürmann F. (2008). Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors. Journal of computational neuroscience. 25 [PubMed]

Hines ML, Markram H, Schürmann F. (2008). Fully implicit parallel simulation of single neurons. Journal of computational neuroscience. 25 [PubMed]

Hong K, Nishiyama M. (2010). From guidance signals to movement: signaling molecules governing growth cone turning. The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. 16 [PubMed]

King JG et al. (2009). A Component-Based Extension Framework for Large-Scale Parallel Simulations in NEURON. Frontiers in neuroinformatics. 3 [PubMed]

Kozloski J. (2011). Automated reconstruction of neural tissue and the role of large-scale simulation. Neuroinformatics. 9 [PubMed]

Kozloski J, Peck C, Eleftheriou M, Fitch B. (2009). Interoperable Model Graph Simulator for High-Performance Computing IBM Technical Report RC24811.

Krichmar JL, Nasuto SJ, Scorcioni R, Washington SD, Ascoli GA. (2002). Effects of dendritic morphology on CA3 pyramidal cell electrophysiology: a simulation study. Brain research. 941 [PubMed]

Markram H. (2006). The blue brain project. Nature reviews. Neuroscience. 7 [PubMed]

Markram H et al. (2008). Identifying, tabulating, and analyzing contacts between branched neuron morphologies Ibm J Res Dev. 52

Mathy A et al. (2009). Encoding of oscillations by axonal bursts in inferior olive neurons. Neuron. 62 [PubMed]

Migliore M, Cannia C, Lytton WW, Markram H, Hines ML. (2006). Parallel network simulations with NEURON. Journal of computational neuroscience. 21 [PubMed]

Moreira JE et al. (2005). Optimization of MPI collective communication on BlueGene-L systems Proc. 19th annual international conference on Supercomputing.

Morrison A, Mehring C, Geisel T, Aertsen AD, Diesmann M. (2005). Advancing the boundaries of high-connectivity network simulation with distributed computing. Neural computation. 17 [PubMed]

Parnas I, Segev I. (1979). A mathematical model for conduction of action potentials along bifurcating axons. The Journal of physiology. 295 [PubMed]

Rempe MJ, Chopp DL. (2006). Predictor-corrector algorithm for reaction-diffusion equations associated with neural activity on branched structures Siam Journal Of Scientific Computing. 28

Rempe MJ, Spruston N, Kath WL, Chopp DL. (2008). Compartmental neural simulations with spatial adaptivity. Journal of computational neuroscience. 25 [PubMed]

Schmitz D et al. (2001). Axo-axonal coupling. a novel mechanism for ultrafast neuronal communication. Neuron. 31 [PubMed]

Segev I, Burke RE, Fleshman JW. (1998). Compartmental models of complex neurons Methods in Neuronal Modeling.

Segev I, London M. (2000). Untangling dendrites with quantitative models. Science (New York, N.Y.). 290 [PubMed]

Sejnowski TJ, Destexhe A, Mainen Z. (1994). An efficient method for computing synaptic conductances based on a kinetic model of receptor binding Neural Comput. 6

Sejnowski TJ, Destexhe A, Mainen ZF. (1998). Kinetic models of synaptic transmission Methods In Neuronal Modeling.

Sosa C. (2008). IBM System Blue Gene Solution: Blue Gene-P Application Development, 3rd Edn.

Thomas LH. (1949). Elliptic Problems in Linear Difference Equations Over a Network Watson Scientific Computing Laboratory Report.

Traub RD et al. (2005). Single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles, and epileptogenic bursts. Journal of neurophysiology. 93 [PubMed]

Traub RD, Wong RK, Miles R, Michelson H. (1991). A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances. Journal of neurophysiology. 66 [PubMed]

Wang Y, Gupta A, Toledo-Rodriguez M, Wu CZ, Markram H. (2002). Anatomical, physiological, molecular and circuit properties of nest basket cells in the developing somatosensory cortex. Cerebral cortex (New York, N.Y. : 1991). 12 [PubMed]

This website requires cookies and limited processing of your personal data in order to function. By continuing to browse or otherwise use this site, you are agreeing to this use. See our Privacy policy and how to cite and terms of use.