van Pelt J, van Ooyen A, Uylings HB. (2001). The need for integrating neuronal morphology databases and computational environments in exploring neuronal structure and function. Anatomy and embryology. 204 [PubMed]

See more from authors: van Pelt J · van Ooyen A · Uylings HB

References and models cited by this paper

Agmon-Snir H, Segev I. (1993). Signal delay and input synchronization in passive dendritic structures. Journal of neurophysiology. 70 [PubMed]

Ascoli GA. (1999). Progress and perspectives in computational neuroanatomy. The Anatomical record. 257 [PubMed]

Ascoli GA, Krichmar JL. (2000). L-Neuron: a modeling tool for the efficient generation and parsimonious description of dendritic morphology. Neurocomputing. 32

Ascoli GA, Krichmar JL, Scorcioni R, Nasuto SJ, Senft SL. (2001). Computer generation and quantitative morphometric analysis of virtual neurons. Anatomy and embryology. 204 [PubMed]

Barrett JN, Crill WE. (1974). Specific membrane properties of cat motoneurones. The Journal of physiology. 239 [PubMed]

Barton BP, Mcgormick BH. (1999). Virtual microscopy of brain tissue. Neurocomputing. 26

Blackstad TW, Karagülle T, Malmierca MS, Osen KK. (1993). Computer methods in neuroanatomy: determining mutual orientation of whole neuronal arbors. Computers in biology and medicine. 23 [PubMed]

Burke RE, Marks WB, Ulfhake B. (1992). A parsimonious description of motoneuron dendritic morphology using computer simulation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 12 [PubMed]

Capowski JJ. (1989). Computer techniques in neuroanatomy. .

Capowski JJ, Sedivec MJ. (1981). Accurate computer reconstruction and graphics display of complex neurons utilizing state-of-the-art interactive techniques. Computers and biomedical research, an international journal. 14 [PubMed]

Davis J, Mckenna T, Zornetzer SF. (1992). Single Neuron Computation.

De Schutter E. (2001). Computational neuroscience: more math is needed to understand the human brain. Mathematics unlimited - 2001 and beyond..

De Schutter E, Cannon RC. (2001). Computational neuroscience realistic modeling for experimentalists..

Devaud JM, Quenet B, Gascuel J, Masson C. (2000). Statistical analysis and parsimonious modelling of dendrograms of in vitro neurones. Bulletin of mathematical biology. 62 [PubMed]

GLASER EM, VANDERLOOS H. (1965). A SEMI-AUTOMATIC COMPUTER-MICROSCOPE FOR THE ANALYSIS OF NEURONAL MORPHOLOGY. IEEE transactions on bio-medical engineering. 12 [PubMed]

Glaser EM, Tagamets M, McMullen NT, Van der Loos H. (1983). The image-combining computer microscope--an interactive instrument for morphometry of the nervous system. Journal of neuroscience methods. 8 [PubMed]

Glaser JR, Glaser EM. (1990). Neuron imaging with Neurolucida--a PC-based system for image combining microscopy. Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society. 14 [PubMed]

Graham BP, Ooyen A van, Ramakers GJA . (2001). Competition for tubulin between growing neurites during development. Neurocomputing. 38-40

Hely TA, Graham B, Ooyen AV. (2001). A computational model of dendrite elongation and branching based on MAP2 phosphorylation. Journal of theoretical biology. 210 [PubMed]

Hillman DE. (1988). Parameters of dendritic shape and substructure Intrinsic and extrinsic determination? Intrinsic determinants of neuronal form and function..

Horsfield K, Woldenberg MJ, Bowes CL. (1987). Sequential and synchronous growth models related to vertex analysis and branching ratios. Bulletin of mathematical biology. 49 [PubMed]

Häusser M, Spruston N, Stuart GJ. (2000). Diversity and dynamics of dendritic signaling. Science (New York, N.Y.). 290 [PubMed]

Innocenti GM, Lehmann P, Houzel JC. (1994). Computational structure of visual callosal axons. The European journal of neuroscience. 6 [PubMed]

Ireland W, Heidel J, Uemura E. (1985). A mathematical model for the growth of dendritic trees. Neuroscience letters. 54 [PubMed]

Jack JJ, Redman SJ. (1971). An electrical description of the motoneurone, and its application to the analysis of synaptic potentials. The Journal of physiology. 215 [PubMed]

Kliemann W. (1987). A stochastic dynamical model for the characterization of the geometrical structure of dendritic processes. Bulletin of mathematical biology. 49 [PubMed]

Koch C, Poggio T, Torre V. (1982). Retinal ganglion cells: a functional interpretation of dendritic morphology. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 298 [PubMed]

Koslow SH. (2000). Should the neuroscience community make a paradigm shift to sharing primary data? Nature neuroscience. 3 [PubMed]

Larkman AU. (1991). Dendritic morphology of pyramidal neurones of the visual cortex of the rat: I. Branching patterns. The Journal of comparative neurology. 306 [PubMed]

Larkman AU, Major G, Stratford KJ, Jack JJ. (1992). Dendritic morphology of pyramidal neurones of the visual cortex of the rat. IV: Electrical geometry. The Journal of comparative neurology. 323 [PubMed]

Li GH, Qin CD. (1996). A model for neurite growth and neuronal morphogenesis. Mathematical biosciences. 132 [PubMed]

Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]

Maletic-Savatic M, Malinow R, Svoboda K. (1999). Rapid dendritic morphogenesis in CA1 hippocampal dendrites induced by synaptic activity. Science (New York, N.Y.). 283 [PubMed]

Markram H, Lübke J, Frotscher M, Sakmann B. (1997). Regulation of synaptic efficacy by coincidence of postsynaptic APs and EPSPs. Science (New York, N.Y.). 275 [PubMed]

Mcgormick BH. (1999). Design of a brain tissue scanner. Neurocomputing. 26

Mcgormick BH, Devaul RW. (1996). Neuron developmental modeling and structural representation: an introduction to the N++ language, an open stochastic L-system. Technical Report December 4.

Mel BW. (1993). Synaptic integration in an excitable dendritic tree. Journal of neurophysiology. 70 [PubMed]

Miller JP, Rall W, Rinzel J. (1985). Synaptic amplification by active membrane in dendritic spines. Brain research. 325 [PubMed]

Mizrahi A et al. (2000). Comparative analysis of dendritic architecture of identified neurons using the Hausdorff distance metric. The Journal of comparative neurology. 422 [PubMed]

Nowakowski RS, Hayes NL, Egger MD. (1992). Competitive interactions during dendritic growth: a simple stochastic growth algorithm. Brain research. 576 [PubMed]

Obermayer K, Dima A, Scholz M. (1999). Semi-automatic quality determination of 3D confocal microscope scans of neuronal cells denoised by 3D-wavelet-shrinkage. PIE-Proceedings: Wavelet Applications VI. 3723

Ooyen_a VAN. (1994). Activity-dependent neural network development. Network: Computation In Neural Systems. 5

Overdijk J, Uylings HB, Kuypers K, Kamstra W. (1978). An economical, semi-automatic system for measuring cellular tree structures in three dimensions, with special emphasis on Golgi-impregnated neurons. Journal of microscopy. 114 [PubMed]

Pelt J van, Uylings HBM. (1999). Modeling the natural variability in the shape of dendritic trees: application to basal dendrites of small rat cortical layer 5 pyramidal neurons. Neurocomputing. 26

Pelt J van, Uylings hbm. (1999). Natural variability in the geometry of dendritic branching patterns. Modeling in the neurosciences: from ionic channels to neural networks..

Poznanski RR. (1999). Modeling in the Neurosciences .

RALL W. (1959). Branching dendritic trees and motoneuron membrane resistivity. Experimental neurology. 1 [PubMed]

Rall W. (1977). Core conductor theory and cable properties of neurons Handbook of Physiology. The Nervous System. Cellular Biology of Neurons. 1(1.1)

Rall W. (1995). The Theoretical Foundation Of Dendritic Function.

Rapp M, Segev I, Yarom Y. (1994). Physiology, morphology and detailed passive models of guinea-pig cerebellar Purkinje cells. The Journal of physiology. 474 [PubMed]

Reinagel P, Reid RC. (2000). Temporal coding of visual information in the thalamus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]

Ruiz-Marcos A. (1983). Mathematical models of cortical structures and their application to the study of pathological conditions. Ramon y Cajals contribution to the neurosciences..

SHOLL DA. (1953). Dendritic organization in the neurons of the visual and motor cortices of the cat. Journal of anatomy. 87 [PubMed]

Sadler M, Berry M. (1983). Morphometric study of the development of Purkinje cell dendritic trees in the mouse using vertex analysis. Journal of microscopy. 131 [PubMed]

Schierwagen A, Claus C. (2001). Dendritic morphology and signal delay in superior colliculus neurons. Neurocomputing. 38-40

Schierwagen A, Grantyn R. (1986). Quantitative morphological analysis of deep superior colliculus neurons stained intracellularly with HRP in the cat. Journal fur Hirnforschung. 27 [PubMed]

Schierwagen A, Pelt J van, Uylings HBM. (2001). Modeling dendritic morphological complexity of deep layer cat superior colliculus neurons. Neurocomputing. 38-40

Segev I, Koch C. (1998). Methods In Neuronal Modeling.

Segev I, Shepherd GM, Rall W. (1995). The Theoretical Foundation Of Dendritic Function.

Shepherd GM et al. (1985). Signal enhancement in distal cortical dendrites by means of interactions between active dendritic spines. Proceedings of the National Academy of Sciences of the United States of America. 82 [PubMed]

Smith TG, Lange GD, Marks WB. (1996). Fractal methods and results in cellular morphology--dimensions, lacunarity and multifractals. Journal of neuroscience methods. 69 [PubMed]

Stockley EW, Cole HM, Brown AD, Wheal HV. (1993). A system for quantitative morphological measurement and electronic modelling of neurons: three-dimensional reconstruction. Journal of neuroscience methods. 47 [PubMed]

Streekstra GJ, Smeulders AW, Boomgaard R van den. (1999). Tracing of curvilinear structures in 3D images with single scale diameter measurement. Proceedings of the second international conference on Scale-Space Theories in Computer Vision.

Streekstra GJ, Smeulders AW, Boomgaard R van den. (2000). Scale dependent differential geometry for the measurement of center line and diameter in 3D curvilinear structures. Proceedings of 6th European Conference on Computer Vision 2000..

Takeda T, Ishikawa A, Ohtomo K, Kobayashi Y, Matsuoka T. (1992). Fractal dimension of dendritic tree of cerebellar Purkinje cell during onto- and phylogenetic development. Neuroscience research. 13 [PubMed]

Tamori Y. (1993). Theory of dendritic morphology. Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics. 48 [PubMed]

Tettoni L, Lehmann P, Houzel JC, Innocenti GM. (1996). Maxsim, software for the analysis of multiple axonal arbors and their simulated activation. Journal of neuroscience methods. 67 [PubMed]

Uemura E, Carriquiry A, Kliemann W, Goodwin J. (1995). Mathematical modeling of dendritic growth in vitro. Brain research. 671 [PubMed]

Uylings HB, Ruiz-Marcos A, van Pelt J. (1986). The metric analysis of three-dimensional dendritic tree patterns: a methodological review. Journal of neuroscience methods. 18 [PubMed]

Van Ooyen A, Pelt J van, Uylings HBM. (2001). Chapter 7 Modeling dendritic geometry and the development of nerve connections. Computational Neuroscience: Realistic modeling for experimentalist.

Van Ooyen A, Van Pelt J, Corner MA. (1995). Implications of activity dependent neurite outgrowth for neuronal morphology and network development. Journal of theoretical biology. 172 [PubMed]

Van Pelt J, Uylings HB, Verwer RW, Pentney RJ, Woldenberg MJ. (1992). Tree asymmetry--a sensitive and practical measure for binary topological trees. Bulletin of mathematical biology. 54 [PubMed]

Van Pelt J, Verwer RW. (1983). The exact probabilities of branching patterns under terminal and segmental growth hypotheses. Bulletin of mathematical biology. 45 [PubMed]

Van Veen MP, Van Pelt J. (1994). Neuritic growth rate described by modeling microtubule dynamics. Bulletin of mathematical biology. 56 [PubMed]

Verwer RW, Pelt J van, Uylings HBM, McConnell P. (1989). Statistical analysis of neuronal populations. Computer techniques in neuroanatomy..

Zhang LI, Tao HW, Holt CE, Harris WA, Poo M. (1998). A critical window for cooperation and competition among developing retinotectal synapses. Nature. 395 [PubMed]

de Brabander JM, Kramers RJ, Uylings HB. (1998). Layer-specific dendritic regression of pyramidal cells with ageing in the human prefrontal cortex. The European journal of neuroscience. 10 [PubMed]

de Brabander JM, Uylings HBM, West MJ, Coleman PD, Flood DG. (2000). Neuronal and cellular changes in aging brain. Neurodegenerative dementias. Clinical features and pathological mechanisms..

de Schutter E. (1994). Modelling the cerebellar Purkinje cell: experiments in computo. Progress in brain research. 102 [PubMed]

van Pelt J, Dityatev AE, Uylings HB. (1997). Natural variability in the number of dendritic segments: model-based inferences about branching during neurite outgrowth. The Journal of comparative neurology. 387 [PubMed]

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Koene RA et al. (2009). NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics. 7 [PubMed]

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van Ooyen A et al. (2014). Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. PloS one. 9 [PubMed]

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