This is the model associated with the paper:

Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW Location-dependent
excitatory synaptic interactions in pyramidal neuron dendrites.
PLoS Comput Biol. 2012;8(7)

The code here reproduces Figures 4b, 4d, and 7ab from the paper.

Usage:
./runall.sh
# This will generate 2 h5 files in data/ and 3 png files in figs/

Dependencies:
NEURON 7.0 - 7.3
Python 2.5 - 2.7
Numpy 1.5.1 - 1.7.1
PyTables 2.1.2 - 2.4.0
Matplotlib 1.0.1 - 1.1.1

Notes: 
Figure 7ab traces may not exactly match those in paper due to PRNG
issues.  Will likely work with other versions of above dependencies
with minor tweaks.

20140208
Note from the ModelDB administrator:
Because I already had neuron with python, easy_install, numpy, and
matplotlib installed, I only needed to install the additional packages
with commands

sudo easy_install cython
sudo easy_install numexpr
sudo easy_install tables

Then the script ./runall.sh created the expected images in the fig
folder: