This is the readme for the model associated with the paper:

Cohen CCH, Popovic MA, Klooster J, Weil M, Mobius W, Nave K, Kole MHP (2020) Saltatory Conduction along Myelinated Axons Involves a Periaxonal Nanocircuit. Cell

This NEURON code was contributed by CCH Cohen.

Startup options:

compilemod.hoc

• Compile or recompile mod files.
• Required for running any model.
• Run once after setup or download to a new machine.

openmodel.hoc

• View and test the model.
• Try different parameter combinations.
• Broadest option for model interaction.

resetmode.hoc

• Switch mode from passive to active and vice versa.

resetses.hoc

• Reset session data to mode-appropriate default options.

resetaxon.hoc

• Switch between model axon options.
• Available options include no myelin, single cable and double cable.

modeltype.type

• Describes current model setup. Composed of three parts separated by dashes.
• First part: active ("act") or passive ("pas").
• Second part: selected cellular location(s) of interest combination. SO = soma, AX = axon, DE = dendrite.
• Third part: axon model type. NOMY = no myelin, SC = single cable, DC = double cable, etc.
• Updated after opening openmodel.hoc.

Usage note: To restore colour mapping if reshaping the shapeplot, select "Shape Plot" by right clicking in the plot window.

Change April 5, 2023: Changes from Charles Cohen to lines 27, 96, and 98 of resetaxon.hoc to fix a bug first identified by Tom Morse