# Default simulation settings for use with netmorph (3D simulation)
# Randal A. Koene, 20080204

# Specified random seed for replicable simulations:
direction_model=segment_history_tension;
veeranglemin=0.0;
veeranglemax=0.75;
dirhistory_selection=none;
general_rtdhs_probability=0.05;
general_rtdhs_minfraction=0.25;
general_rtdhs_maxfraction=1.0;

# Synapse formation model specification:
candidate_synapses=false;

# Output requested:
sample_dt=2160;

outattr_show_progress=true;
outattr_make_full_Txt=false;
outattr_track_synaptogenesis=false;
outattr_track_nodegenesis=false;
statsattr_collect_statistics=true;
outattr_show_stats=true;
warnings_on=true;
outattr_show_figure=true;

figattr_use_color=true;
CT_background=0x000000;
CT_neuron_principal=0x0000FF;
CT_connection_excitatory=0xFFFFFF;
CT_connection_inhibitory=0xFF0000;
CT_synapses=0xFFFFFF;
CT_dendrites=0x00FF00;
CT_axon_excitatory=0xFFFF00;
CT_axon_inhibitory=0xFF0000;
CT_partition_border=0x3F3F3F;
CT_partition_overfull=0xFFFFFF;
CT_partition_evaluated0xFFFF3F;
CT_progress_text=0x7F7FFF;
CT_AMPAR=0xFFFFFF;
CT_NMDAR=0xFFFF00;
CT_GABAR=0xFF7F7F;
figattr_tsupd_visibly=true;
figattr_fill_somas=true;
figattr_neurons=true;
figattr_connections=false;
figattr_presynaptic=true;
figattr_postsynaptic=true;
figattr_synapses=true;
figattr_partitions=false;
figattr_show_scale=true;
figattr_make_full_Fig=true;
figattr_make_zoom_Fig=false;
figattr_make_connections_Fig=false;
figattr_make_abstract_Fig=false;
figattr_make_neurons_Figs=false;
figattr_show_axis_arrows=true;
figattr_progress=text;

figuresequence=true;
sequence_zoom_centerX=0;
sequence_zoom_centerY=0;
sequence_zoom_centerZ=0;
sequence_zoom_disttoedge=200.0;
figattr_fibres_nobox=false;
figattr_box_fibre_independently=true;
combinesequence=true;
combinetype=gif;
autorotatesequence=true;
ROT_x=0;
ROT_y=0;
ROT_z=0;
ROT_interval_x=1.5;
ROT_interval_y=9.42;
ROT_interval_z=0;
combinemagnification=0.8;

# Note: This default script was adapted from
# ~/doc/tex/IF-2007/IF-2007.network-excerpt.rotating.clp.

