NeuroML2 description of a reduced-morphology layer V pyramidal cell.
Christoph Metzner & Tuomo Mäki-Marttunen, 2015-2016
Files included in the NeuroML2 implementation:
CaDynamics_E2_NML2.nml #Ca2+ dynamics nml file
CaDynamics_E2_NML2_apicTrunk.nml #Ca2+ dynamics (using parameters for
# the apical trunk) nml file
CaDynamics_E2_NML2_apicTuft.nml #Ca2+ dynamics (using parameters for
# the apical tuft) nml file
CaDynamics_E2_NML2_soma.nml #Ca2+ dynamics (using parameters for
# the soma) nml file
Ca_HVA.channel.nml #High-voltage activated Ca2+ current nml file
Ca_LVAst.channel.nml #Low-voltage activated Ca2+ current nml file
Ih.channel.nml #HCN channel current nml file
Im.channel.nml #Muscarinic K+ current nml file
K_Pst.channel.nml #Persistent K+ current nml file
K_Tst.channel.nml #Transient K+ current nml file
NaTa_t.channel.nml #Transient Na+ current nml file
Nap_Et2.channel.nml #Persistent Na+ current nml file
SK_E2.channel.nml #SK current nml file
SKv3_1.channel.nml #Kv3.1 K+ current nml file
pas.channel.nml #Passive current nml file
Hay_Cell_Condition1.net.nml #Nml file defining the network (of one neuron)
LEMS_RedL5bPyrCellHayEtAl2011-Condition1.xml #LEMS file defining the
# stimulus for condition 1
Soma_AllCML.cell.nml #Nml file defining the neuron morphology
# and parameters for ion channel
# conductances and Ca2+ dynamics
The nml files are based on the implementation given in
https://github.com/OpenSourceBrain/L5bPyrCellHayEtAl2011