import sys, pprint
import nest
import numpy as np
import matplotlib.pyplot as plt
import time
import ipdb
nest.set_verbosity('M_ALL')
def mds_nest_sim(stim, curr_arr, d_dt):
time_stamps = np.arange(0,curr_arr.size*d_dt,d_dt)
if stim == 'corrcost':
sim_lenght = time_stamps[-1]
n_time_steps = int(sim_lenght/d_dt)
sim_type = 'corrcost'
elif stim == 'corrcostatratti':
sim_lenght = time_stamps[-1]
n_time_steps = int(sim_lenght/d_dt)
sim_type = 'corrcostatratti'
time_step = d_dt
sim_time = time_step*n_time_steps
t_arr = time_stamps
nest.ResetKernel()
# Set simulation parameters
nest.resolution = d_dt
# create a step current generator
cur_gen = nest.Create("step_current_generator")
# set times at which current changes and amplitudes of step current
nest.SetStatus(cur_gen, {"amplitude_times": t_arr[t_arr>0],
"amplitude_values": curr_arr[t_arr>0]})
neuron = nest.Create('migliore')
nest.SetStatus(neuron, {"V_m": -72.5})
if stim == 'corrcost':
nest.SetStatus(neuron,{"corrcostatratti":0,
"corrcost":1})
elif stim == 'corrcostatratti':
nest.SetStatus(neuron,{"corrcostatratti":1,
"corrcost":0})
pprint.pprint(nest.GetStatus(neuron))
delay = d_dt
weight = 1.0
conn_spec = {"rule": "all_to_all"}
syn_spec = {'weight': weight, 'delay': delay}
nest.Connect(cur_gen, neuron, conn_spec, syn_spec)
multimeter = nest.Create(
'multimeter', 1, {"interval": d_dt, 'record_from': ['V_m', 'Iadap_ini', 'Idep_ini']}) # , 'I_syn'
nest.Connect(multimeter, neuron)
tic = time.perf_counter()
nest.Simulate(sim_time)
toc = time.perf_counter()
print(f"time: {toc - tic:0.4f} seconds")
dmm = nest.GetStatus(multimeter)[0]
V_m = dmm["events"]["V_m"]
# I = dmm["events"]["I_syn"]
Iada = dmm["events"]["Iadap_ini"]
Idep = dmm["events"]["Idep_ini"]
t = dmm["events"]["times"]
time_stamps = np.array(t)
membrane_voltage = np.array(V_m)
I_adapt = np.array(Iada)
I_dep = np.array(Idep)
return time_stamps, membrane_voltage, I_adapt, I_dep