// genesis // Setting the axonal propagation velocity float CABLE_VEL = 1 // scale factor = 1/(cable velocity) sec/meter float destlim = {C23FS_P5IBd_destlim} /* * Usage : * volumeconnect source-path destination-path * [-relative] * [-sourcemask {box,ellipse} x1 y1 x2 y2] * [-sourcehole {box,ellipse} x1 y1 x2 y2] * [-destmask {box,ellipse} x1 y1 x2 y2] * [-desthole {box,ellipse} x1 y1 x2 y2] * [-probability p] */ echo Making connections from the C23FS cells to the P5IBd cells. // C23FS - P5IBd GABAa rvolumeconnect /C23FSnet/C23FS[]/soma/spk15 \ /P5IBdnet/P5IBd[]/axona/Inh_ch9C23FSGABAa@all \ -relative \ -sourcemask box -1 -1 -1 1 1 1 \ -destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \ -probability 1.0*{C23FS_P5IBd_prob} echo Setting weights and delays for C23FS->P5IBd connections. // assigning delays using the volumedelay function /* * Usage : * volumedelay path * [-fixed delay] * [-radial propagation_velocity] * [-uniform range] (not used here) * [-gaussian sd max] (not used here) * [-exp mid max] (not used here) * [-absoluterandom] (not used here) */ rvolumedelay /C23FSnet/C23FS[]/soma/spk15 -radial {C23FS_P5IBd_axdelayCV} -add -gaussian {C23FS_P5IBd_axdelaystdev} {C23FS_P5IBd_axdelaymaxdev} //C23FS - P5IBd GABAa syndelay /P5IBdnet/P5IBd[]/axona/Inh_ch9C23FSGABAa {C23FS_P5IBd_syndelay} -add -gaussian {C23FS_P5IBd_syndelaystdev} {C23FS_P5IBd_syndelaymaxdev} // assigning weights using the volumeweight function /* * Usage : * volumeweight sourcepath * [-fixed weight] * [-decay decay_rate max_weight min_weight] * [-uniform range] * [-gaussian sd max] * [-exponential mid max] * [-absoluterandom] */ rvolumeweight /C23FSnet/C23FS[]/soma/spk15 -decay {C23FSdecayrate} {C23FSmaxwgt} {C23FSminwgt}