// genesis

// Setting the axonal propagation velocity
float CABLE_VEL = 1	// scale factor = 1/(cable velocity) sec/meter

float destlim = {P23FRBa_P23RSb_destlim}

/*
 * Usage :
 * planarconnect source-path destination-path
 *		 [-relative]
 *		 [-sourcemask {box,ellipse} x1 y1 x2 y2]
 *		 [-sourcehole {box,ellipse} x1 y1 x2 y2]
 *		 [-destmask   {box,ellipse} x1 y1 x2 y2]
 *		 [-desthole   {box,ellipse} x1 y1 x2 y2]
 *		 [-probability p]
 */

echo Making connections from the P23FRBa cells to the P23RSb cells.

//P23FRBa - P23RSb AMPA

str s

//Load synapse location array

str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc"

foreach s ({arglist {locations}})

    rvolumeconnect /P23FRBanet/P23FRBa[]/soma/spk22  \
	      /P23RSbnet/P23RSb[]/{s}/Ex_ch2P23FRBAMPA@all	    \
	      -relative			    \
	      -sourcemask box -1 -1  -1  1  1  1  \
	      -destmask   box -{destlim} -{destlim}  -1 {destlim}  {destlim}  -1   \
          -probability 0.02778*{P23FRBa_P23RSb_prob}

end

//P23FRBa - P23RSb NMDA

str s

//Load synapse location array

str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc"

foreach s ({arglist {locations}})

    rvolumeconnect /P23FRBanet/P23FRBa[]/soma/spk22  \
	      /P23RSbnet/P23RSb[]/{s}/Ex_ch2P23FRBNMDA@all	    \
	      -relative			    \
	      -sourcemask box -1 -1  -1  1  1  1   \
	      -destmask   box -{destlim} -{destlim}  -1 {destlim}  {destlim}  1   \
          -probability 0.02778*{P23FRBa_P23RSb_prob}

end

echo Setting weights and delays for P23FRBa->P23RSb connections.
// assigning delays using the planardelay function

/* 
 * Usage :
 * planardelay path 
 * [-fixed delay]
 * [-radial propagation_velocity] 
 * [-uniform range]   (not used here)
 * [-gaussian sd max] (not used here)
 * [-exp mid max]     (not used here)
 * [-absoluterandom]  (not used here)
 */

rvolumedelay /P23FRBanet/P23FRBa[]/soma/spk22 -radial  {P23FRBa_P23RSb_axdelayCV} -add -gaussian {P23FRBa_P23RSb_axdelaystdev} {P23FRBa_P23RSb_axdelaymaxdev}

//P23FRBa - P23RSb AMPA

str s

//Load synapse location array

str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc"

foreach s ({arglist {locations}})

    syndelay    /P23RSbnet/P23RSb[]/{s}/Ex_ch2P23FRBAMPA {P23FRBa_P23RSb_syndelay} -add -gaussian {P23FRBa_P23RSb_syndelaystdev} {P23FRBa_P23RSb_syndelaymaxdev}

end

//P23FRBa - P23RSb NMDA

str s

//Load synapse location array

str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc"

foreach s ({arglist {locations}})

    syndelay    /P23RSbnet/P23RSb[]/{s}/Ex_ch2P23FRBNMDA {P23FRBa_P23RSb_syndelay} -add -gaussian {P23FRBa_P23RSb_syndelaystdev} {P23FRBa_P23RSb_syndelaymaxdev}

end

// assigning weights using the planarweight function

/* 
 * Usage :
 *  planarweight sourcepath 
 *          [-fixed weight]
 *          [-decay decay_rate max_weight min_weight]
 *          [-uniform range] 
 *          [-gaussian sd max] 
 *          [-exponential mid max]
 *          [-absoluterandom]
 */

rvolumeweight /P23FRBanet/P23FRBa[]/soma/spk22 -decay {P23FRBdecayrate} {P23FRBmaxwgt} {P23FRBminwgt}