// cell.p - Cell parameter file used in Tutorial #5
// Format of file :
// x,y,z,dia are in microns, all other units are SI (Meter Kilogram Sec Amp)
// In polar mode 'r' is in microns, theta and phi in degrees
// Control line options start with a '*'
// The format for each compartment parameter line is :
//name parent r theta phi d ch dens ...
//in polar mode, and in cartesian mode :
//name parent x y z d ch dens ...
// For channels, "dens" = maximum conductance per unit area of compartment
// For spike elements, "dens" is the spike threshold
// Coordinate mode
*relative
*cartesian
*asymmetric
// Specifying constants
*set_compt_param RM 5.0 //5.0
*set_compt_param RA 2.50 //2.50
*set_compt_param CM 0.009 //0.009
*set_compt_param EREST_ACT -0.07
*set_compt_param ELEAK -0.0666
//SOMA *************************************************************
// For the soma, use the leakage potential (-0.07 + 0.0106) for Em
// Actually, after Traub et al. J Neurophys 2003;89:909-921, will maintain
// leakage potential at ELEAK -0.07
soma none 0 0 15 16 Ca_s1 -6.8967141E15 NaF1 1875 \
NaP1 1.2 KDR1 1250 \
KA1 300 K21 1 \
KM1 75 CaL1 1 \
CaH1 10 KCs1 120 \
AR1 2.5 KAHPs1 0.4
*set_compt_param RA 2.5
*set_compt_param CM 0.018
*set_compt_param ELEAK -0.0666
*set_compt_param RM 2.5
//APICAL DENDRITE COMPARTMENTS ***************************************
// apdend1 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend1 soma 0 0 50 8 Ca_d1 -8.2760568E15 NaF1 2500 \
NaP1 1.6 KDR1 2500 \
KA1 600 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend2 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend2 apdend1 0 0 50 7.2 Ca_d1 -9.1956195E15 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend3 Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend3 apdend2 0 0 50 6.4 Ca_d1 -1.03450719E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend4aR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend4aR apdend3 25 0 43.3 4.00 Ca_d1 -1.65522596E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend4bR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend4bR apdend4aR 25 0 43.3 4.00 Ca_d1 -1.65522886E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5aRRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aRRR apdend4bR 6.4 11.2 48.3 1.6 Ca_d1 -4.1380253E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5bRRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bRRR apdend5aRRR 6.4 11.2 48.3 1.6 Ca_d1 -4.1380215E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5cRRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cRRR apdend5bRRR 6.4 11.2 48.3 1.6 Ca_d1 -4.1379334E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5aRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aRR apdend4bR 2.2 -3.8 49.8 1.6 Ca_d1 -4.1380253E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5bRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bRR apdend5aRR 2.2 -3.8 49.8 1.6 Ca_d1 -4.1380215E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5cRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cRR apdend5bRR 2.2 -3.8 49.8 1.6 Ca_d1 -4.1379334E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5aRLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aRLL apdend4bR -11.2 -6.4 48.3 1.6 Ca_d1 -4.1380253E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5bRLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bRLL apdend5aRLL -11.2 -6.4 48.3 1.6 Ca_d1 -4.1380215E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5cRLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cRLL apdend5bRLL -11.2 -6.4 48.3 1.6 Ca_d1 -4.1379334E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5aRL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aRL apdend4bR -3.8 2.2 49.8 1.6 Ca_d1 -4.1380253E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5bRL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bRL apdend5aRL -3.8 2.2 49.8 1.6 Ca_d1 -4.1380215E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5cRL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cRL apdend5bRL -3.8 2.2 49.8 1.6 Ca_d1 -4.1379334E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend4aL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend4aL apdend3 -25 0 43.3 4.00 Ca_d1 -1.65523176E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend4bL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend4bL apdend4aL -25 0 43.3 4.00 Ca_d1 -1.65522886E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5aLLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aLLL apdend4bL -6.4 11.2 48.3 1.6 Ca_d1 -4.1380253E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5bLLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bLLL apdend5aLLL -6.4 11.2 48.3 1.6 Ca_d1 -4.1380215E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5cLLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cLLL apdend5bLLL -6.4 11.2 48.3 1.6 Ca_d1 -4.1379334E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5aLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aLL apdend4bL -2.2 -3.8 49.8 1.6 Ca_d1 -4.1380253E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5bLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bLL apdend5aLL -2.2 -3.8 49.8 1.6 Ca_d1 -4.1380215E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5cLL Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cLL apdend5bLL -2.2 -3.8 49.8 1.6 Ca_d1 -4.1379334E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5aLRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aLRR apdend4bL 11.2 -6.4 48.3 1.6 Ca_d1 -4.1380253E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5bLRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bLRR apdend5aLRR 11.2 -6.4 48.3 1.6 Ca_d1 -4.1380215E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5cLRR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cLRR apdend5bLRR 11.2 -6.4 48.3 1.6 Ca_d1 -4.1379334E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5aLR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5aLR apdend4bL 3.8 2.2 49.8 1.6 Ca_d1 -4.1380253E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5bLR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5bLR apdend5aLR 3.8 2.2 49.8 1.6 Ca_d1 -4.1380215E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apdend5cLR Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apdend5cLR apdend5bLR 3.8 2.2 49.8 1.6 Ca_d1 -4.1379334E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
//APICAL OBLIQUE DENDRITE COMPARTMENTS ***************************************
// apobdistRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistRa apdend1 35.4 35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobdistRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistRb apobdistRa 35.4 35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobdistRc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistRc apobdistRb 35.4 35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobproxRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxRa apdend1 35.4 -35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobproxRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxRb apobproxRa 35.4 -35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobproxRc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxRc apobproxRb 35.4 -35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobdistLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistLa apdend1 -35.4 35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobdistLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistLb apobdistLa -35.4 35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobdistLc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobdistLc apobdistLb -35.4 35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobproxLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxLa apdend1 -35.4 -35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobproxLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxLb apobproxLa -35.4 -35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// apobproxLc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
apobproxLc apobproxLb -35.4 -35.4 0 1.0 Ca_d1 -6.6208454E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
//BASAL DENDRITE COMPARTMENTS ************************************************
// basalLdeepa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLdeepa soma -9.4 -16.2 -46.4 1.0 Ca_d1 -6.620845E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLdeepb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLdeepb basalLdeepa -9.4 -16.2 -46.4 1.0 Ca_d1 -6.6208467E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLdeepc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLdeepc basalLdeepb -9.4 -16.2 -46.4 1.0 Ca_d1 -6.6207608E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLmiddeepa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmiddeepa soma -18.3 31.7 -34.1 1.0 Ca_d1 -6.620845E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLmiddeepb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmiddeepb basalLmiddeepa -18.3 31.7 -34.1 1.0 Ca_d1 -6.6208467E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLmiddeepc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmiddeepc basalLmiddeepb -18.3 31.7 -34.1 1.0 Ca_d1 -6.6207608E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLmidsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmidsupera soma -40.2 -23.2 -18.7 1.0 Ca_d1 -6.620845E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLmidsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmidsuperb basalLmidsupera -40.2 -23.2 -18.7 1.0 Ca_d1 -6.6208467E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLmidsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLmidsuperc basalLmidsuperb -40.2 -23.2 -18.7 1.0 Ca_d1 -6.6207608E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLsupera soma -42.6 24.6 -8.7 1.0 Ca_d1 -6.620845E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLsuperb basalLsupera -42.6 24.6 -8.7 1.0 Ca_d1 -6.6208467E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalLsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalLsuperc basalLsuperb -42.6 24.6 -8.7 1.0 Ca_d1 -6.6207608E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRdeepa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRdeepa soma 9.4 -16.2 -46.4 1.0 Ca_d1 -6.620845E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRdeepb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRdeepb basalRdeepa 9.4 -16.2 -46.4 1.0 Ca_d1 -6.6208467E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRdeepc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRdeepc basalRdeepb 9.4 -16.2 -46.4 1.0 Ca_d1 -6.6207608E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRmiddeepa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmiddeepa soma 18.3 31.7 -34.1 1.0 Ca_d1 -6.620845E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRmiddeepb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmiddeepb basalRmiddeepa 18.3 31.7 -34.1 1.0 Ca_d1 -6.6208467E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRmiddeepc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmiddeepc basalRmiddeepb 18.3 31.7 -34.1 1.0 Ca_d1 -6.6207608E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRmidsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmidsupera soma 40.2 -23.2 -18.7 1.0 Ca_d1 -6.620845E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRmidsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmidsuperb basalRmidsupera 40.2 -23.2 -18.7 1.0 Ca_d1 -6.6208467E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRmidsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRmidsuperc basalRmidsuperb 40.2 -23.2 -18.7 1.0 Ca_d1 -6.6207608E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRsupera Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRsupera soma 42.6 24.6 -8.7 1.0 Ca_d1 -6.620845E16 NaF1 1875 \
NaP1 1.2 KDR1 1875 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRsuperb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRsuperb basalRsupera 42.6 24.6 -8.7 1.0 Ca_d1 -6.6208467E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// basalRsuperc Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
basalRsuperc basalRsuperb 42.6 24.6 -8.7 1.0 Ca_d1 -6.6207608E16 NaF1 250 \
NaP1 0.16 KDR1 125 \
KA1 40 K21 2 \
KM1 150 CaL1 2 \
CaH1 20 KCd1 240 \
AR1 5 KAHPd1 0.8
// Specifying constants for axonal compartment RMCM=0.0024 (0.0009)
*set_compt_param RM 0.10 //(0.1)
*set_compt_param RA 1.00 //(1.00)
*set_compt_param CM 0.009 //(0.009)(0.024)
//*set_compt_param EREST_ACT -0.07
//*set_compt_param ELEAK -0.07
//AXONAL COMPARTMENTS ***************************************
// axona Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axona soma 0 0 -25 1.8 NaF1 4000 \
NaP1 0.0 KDR1 4000 \
KA1 20 K21 1 \
KM1 0 CaL1 0 \
CaH1 0 \
AR1 0
// axonb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonb axona 0 0 -50 1.4 NaF1 4000 \
NaP1 0.0 KDR1 4000 \
KA1 20 K21 1 \
KM1 0 CaL1 0 \
CaH1 0 \
AR1 0
// axonLa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonLa axonb -8.7 0 -49.2 1.0 NaF1 4000 \
NaP1 0.0 KDR1 4000 \
KA1 20 K21 1 \
KM1 0 CaL1 0 \
CaH1 0 \
AR1 0
// axonLb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonLb axonLa -8.7 0 -49.2 1.0 NaF1 4000 \
NaP1 0.0 KDR1 4000 \
KA1 20 K21 1 \
KM1 0 CaL1 0 \
CaH1 0 \
AR1 0
// axonRa Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonRa axonb 8.7 0 -49.2 1.0 NaF1 4000 \
NaP1 0.0 KDR1 4000 \
KA1 20 K21 1 \
KM1 0 CaL1 0 \
CaH1 0 \
AR1 0
// axonRb Fig 1. Traub et al., J Neurophysiol 2003;89:909-921
// Differs from Traub et al., in that axon is vertical
axonRb axonRa 8.7 0 -49.2 1.0 NaF1 4000 \
NaP1 0.0 KDR1 4000 \
KA1 20 K21 1 \
KM1 0 CaL1 0 \
CaH1 0 \
AR1 0