// genesis // Setting the Resistance of the Gap Junction (1/conductance) float Rgap = 3.0e9 // Ohms (1/Mhos) from Traub 2005 paper //float P23RSd_SEPX = 25e-6 //float P23RSd_SEPY = 25e-6 //float P23RSd_NX = 5 //float P23RSd_NY = 5 int i,j,dexN,dexE,dexS,dexW int conn1dex, conn2dex float test1, test2 str conn1loc="", conn2loc="" float globalconnprob=0.0234 //after Traub 2005 float randconn int jnodedex,inodedex,jnodecalc int jdexcalc, jtest1, jtest2, jtest3, itest1, itest2 echo P23RSd - P23FRBa Gap Junctions for (i=0;i<=(P23RSd_NY-1);i=i+1) for (j=0;j<=(P23RSd_NX-1);j=j+1) dexN=i-1 dexE=j+1 dexS=i+1 dexW=j-1 // N randconn = { rand 0 1.0 } if ({dexN >= 0} && {randconn < {globalconnprob}}) conn1dex=i*P23RSd_NX+j conn2dex=(i-1)*P23RSd_NX+j float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} if ({itest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} } -(i/2)*P23FRBa_NX end if ({itest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i-1)/2)*P23FRBa_NX end conn1loc="axonLa" conn2loc="axonRa" addmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} RAXIAL {Rgap} Vm addmsg /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} RAXIAL {Rgap} Vm end if ({dexN == -1} && {randconn < {globalconnprob}} && { {mynode} >= {sqrtNnodes} }) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=(P23RSd_NY-1)*P23RSd_NX + j float truncarg = j/2 conn2dex = (P23FRBa_NY-1)*P23FRBa_NX + {trunc {truncarg} } conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} - {sqrtNnodes}} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} - {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} + {sqrtNnodes}} RAXIAL {Rgap} Vm raddmsg@{{mynode} - {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end // NE randconn = { rand 0 1.0 } if ({dexN >= 0} && {dexE < (P23RSd_NX-1)} && {randconn < {globalconnprob}}) conn1dex=i*P23RSd_NX+j conn2dex=(i-1)*P23RSd_NX+j+1 float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} float jtest1arg = (j/2) jtest1 = {trunc {jtest1arg} } jtest2 = {j} - 2*{jtest1} if ({itest2==0}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX+1 end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end end if ({itest2==1}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i-1)/2)*P23FRBa_NX+1 end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i-1)/2)*P23FRBa_NX end end conn1loc="axonLa" conn2loc="axonRa" addmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} RAXIAL {Rgap} Vm addmsg /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} RAXIAL {Rgap} Vm end float jnodecalcarg = {mynode}/{sqrtNnodes} jnodecalc = {trunc {jnodecalcarg} } jnodedex = {mynode} - {sqrtNnodes}*jnodecalc if ({dexN == -1} && {randconn < {globalconnprob}} && {dexE < (P23RSd_NX-1)} && { {mynode} >= {sqrtNnodes} }) //for nodal edge //check here above conn1dex=i*P23RSd_NX+j conn2dex=(P23RSd_NY-1)*P23RSd_NX+j+1 float truncarg = j/2 conn2dex = (P23FRBa_NY-1)*P23FRBa_NX + {trunc {truncarg} } + 1 conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} - {sqrtNnodes}} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} - {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} + {sqrtNnodes}} RAXIAL {Rgap} Vm raddmsg@{{mynode} - {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end if ({dexN == -1} && {randconn < {globalconnprob}} && {dexE >= P23RSd_NX-1} && { {mynode} >= {sqrtNnodes} } && {{jnodedex} < {sqrtNnodes-1}}) //for nodal edge corner conn1dex=i*P23RSd_NX+j conn2dex=(P23RSd_NY-1)*P23RSd_NX conn2dex = (P23FRBa_NY-1)*P23FRBa_NX conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} - {sqrtNnodes} + 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} - {sqrtNnodes} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} + {sqrtNnodes} - 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} - {sqrtNnodes} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end if ( {dexE >= P23RSd_NX-1} && {dexN > -1} && {randconn < {globalconnprob}} &&{ {jnodedex} < {sqrtNnodes-1} } ) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=(i-1)*P23RSd_NX float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} if ({itest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end if ({itest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i-1)/2)*P23FRBa_NX end conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} + 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} - 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end // E randconn = { rand 0 1.0 } if ({dexE < P23RSd_NX-1} && {randconn < {globalconnprob}}) conn1dex=i*P23RSd_NX+j conn2dex=i*P23RSd_NX+j+1 float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} float jtest1arg = (j/2) jtest1 = {trunc {jtest1arg} } jtest2 = {j} - 2*{jtest1} if ({itest2==0}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX+1 end if ({jtest2==1}) float conn2dexarg = conn2dex/2 //pk conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX+1 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end end if ({itest2==1}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX+1 end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX-1 //pk perhaps needs to be changed to: conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX end end conn1loc="axonLa" conn2loc="axonRa" addmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} RAXIAL {Rgap} Vm addmsg /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} RAXIAL {Rgap} Vm end float jnodecalcarg = {mynode}/{sqrtNnodes} jnodecalc = {trunc {jnodecalcarg} } jnodedex = {mynode} - {sqrtNnodes}*jnodecalc if ({dexE >= P23RSd_NX-1} && {randconn < {globalconnprob}} && { {jnodedex} < {sqrtNnodes-1} }) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=i*P23RSd_NX float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} if ({itest2==0}) conn2dex = (i/2)*P23FRBa_NX end if ({itest2==1}) conn2dex = ((i-1)/2)*P23FRBa_NX end conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} + 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} - 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end // SE randconn = { rand 0 1.0 } if ({dexE < (P23RSd_NX-1) } && {dexS < (P23RSd_NY-1) } && {randconn<{globalconnprob}}) conn1dex=i*P23RSd_NX+j conn2dex=(i+1)*P23RSd_NX+j+1 float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} float jtest1arg = (j/2) jtest1 = {trunc {jtest1arg} } jtest2 = {j} - 2*{jtest1} if ({itest2==0}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX+1 end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end end if ({itest2==1}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX+1 end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX end end conn1loc="axonLa" conn2loc="axonRa" addmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} RAXIAL {Rgap} Vm addmsg /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} RAXIAL {Rgap} Vm end float jnodecalcarg = {mynode}/sqrtNnodes jnodecalc = {trunc {jnodecalcarg} } jnodedex = {mynode} - {sqrtNnodes}*jnodecalc if ({dexE >= (P23RSd_NX-1)} && {randconn < {globalconnprob}} && {dexS < (P23RSd_NY-1)} && { {jnodedex} < {sqrtNnodes-1} }) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=(i+1)*P23RSd_NX float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} if ({itest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end if ({itest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX end conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} + 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} - 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end //pk if ({dexS >= P23RSd_NY-1} && {randconn < {globalconnprob}} && {dexE >= P23RSd_NX-1} && { {jnodedex} < {sqrtNnodes-1} }) //for nodal edge corner if ({dexS >= P23RSd_NY-1} && {randconn < {globalconnprob}} && {dexE >= P23RSd_NX-1} && { {jnodedex} < {sqrtNnodes-1} } && {{mynode} < {{sqrtNnodes}*{sqrtNnodes-1}}}) //for nodal edge corner conn1dex=i*P23RSd_NX+j conn2dex=0 conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} + {sqrtNnodes} + 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} + {sqrtNnodes} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} - {sqrtNnodes} - 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} + {sqrtNnodes} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end if ( {dexE < P23RSd_NX-1} && {dexS >= P23RSd_NY-1} && {randconn < {globalconnprob}} &&{ {mynode} < {{sqrtNnodes}*{sqrtNnodes-1}} } ) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=(j+1) float jtest1arg = (j/2) jtest1 = {trunc {jtest1arg} } jtest2 = {j} - 2*{jtest1} if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} } + 1 end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} } end conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} + {sqrtNnodes}} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} + {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} - {sqrtNnodes}} RAXIAL {Rgap} Vm raddmsg@{{mynode} + {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end // S randconn = { rand 0 1.0 } if ({dexS < {P23RSd_NY-1}} && {randconn < {globalconnprob}}) conn1dex=i*P23RSd_NX+j conn2dex=(i+1)*P23RSd_NX+j float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} if ({itest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end if ({itest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX end conn1loc="axonLa" conn2loc="axonRa" addmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} RAXIAL {Rgap} Vm addmsg /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} RAXIAL {Rgap} Vm end //pk if ({dexS >= P23RSd_NY-1} && {randconn < {globalconnprob}} && { {mynode} >= {sqrtNnodes}*{sqrtNnodes-1} }) //for nodal edge if ({dexS >= P23RSd_NY-1} && {randconn < {globalconnprob}} && { {mynode} < {sqrtNnodes}*{sqrtNnodes-1} }) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=j float truncarg = j/2 conn2dex = {trunc {truncarg} } conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} + {sqrtNnodes}} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} + {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} - {sqrtNnodes}} RAXIAL {Rgap} Vm raddmsg@{{mynode} + {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end // SW randconn = { rand 0 1.0 } if ({dexS < P23RSd_NY-1} && {dexW >= 0} && {randconn<{globalconnprob}}) conn1dex=i*P23RSd_NX+j conn2dex=(i+1)*P23RSd_NX+j-1 float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} float jtest1arg = (j/2) jtest1 = {trunc {jtest1arg} } jtest2 = {j} - 2*{jtest1} if ({itest2==0}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end end if ({itest2==1}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX end end conn1loc="axonLa" conn2loc="axonRa" addmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} RAXIAL {Rgap} Vm addmsg /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} RAXIAL {Rgap} Vm end float jnodecalcarg = {mynode}/{sqrtNnodes} jnodecalc = {trunc {jnodecalcarg} } jnodedex = {mynode} - {sqrtNnodes}*jnodecalc if ({dexE == 1} && {randconn < {globalconnprob}} && {dexS < P23RSd_NY-1} && { {jnodedex} > 0 }) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=(i+2)*P23RSd_NX-1 float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} if ({itest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end if ({itest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX end conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} - 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} - 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} + 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} - 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end //pk if ({dexS >= P23RSd_NY-1} && {randconn < {globalconnprob}} && {dexE <= 2} && { {jnodedex} > 0 }) //for nodal edge corner if ({dexS >= P23RSd_NY-1} && {randconn < {globalconnprob}} && {dexE <= 2} && { {jnodedex} > 0 } && { {mynode} < {{sqrtNnodes}*{sqrtNnodes-1}}}) //for nodal edge corner conn1dex=i*P23RSd_NX+j conn2dex=P23RSd_NX-1 conn2dex = P23FRBa_NX-1 conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} + {sqrtNnodes} - 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} - {sqrtNnodes} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} - {sqrtNnodes} + 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} - {sqrtNnodes} + 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end if ( {dexE > 2} && {dexS >= P23RSd_NY-1} && {randconn < {globalconnprob}} &&{ {mynode} < {{sqrtNnodes}*{sqrtNnodes-1}} } ) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=(j-1) float jtest1arg = (j/2) jtest1 = {trunc {jtest1arg} } jtest2 = {j} - 2*{jtest1} if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} } end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} } end conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} + {sqrtNnodes}} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} + {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} - {sqrtNnodes}} RAXIAL {Rgap} Vm raddmsg@{{mynode} + {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end // W randconn = { rand 0 1.0 } if ({dexW >= 0} && {randconn < {globalconnprob}}) conn1dex=i*P23RSd_NX+j conn2dex=(i)*P23RSd_NX+j-1 float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} float jtest1arg = (j/2) jtest1 = {trunc {jtest1arg} } jtest2 = {j} - 2*{jtest1} if ({itest2==0}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end end if ({itest2==1}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i+1)/2)*P23FRBa_NX end end conn1loc="axonLa" conn2loc="axonRa" addmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} RAXIAL {Rgap} Vm addmsg /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} RAXIAL {Rgap} Vm end float jnodecalcarg = {mynode}/{sqrtNnodes} jnodecalc = {trunc {jnodecalcarg} } jnodedex = {mynode} - {sqrtNnodes}*jnodecalc if ({dexW == -1} && {randconn < {globalconnprob}} && { {jnodedex} > 0 }) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=(i+1)*P23RSd_NX-1 float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} if ({itest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} } - (i/2)*P23FRBa_NX end if ({itest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} } - ((i+1)/2)*P23FRBa_NX end conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} - 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} - 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} + 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} - 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end // NW randconn = { rand 0 1.0 } if ({dexW >= 0} && {dexN >= 0} && {randconn < {globalconnprob}}) conn1dex=i*P23RSd_NX+j conn2dex=(i-1)*P23RSd_NX+j-1 float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} float jtest1arg = (j/2) jtest1 = {trunc {jtest1arg} } jtest2 = {j} - 2*{jtest1} if ({itest2==0}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end end if ({itest2==1}) if ({jtest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i-1)/2)*P23FRBa_NX end if ({jtest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i-1)/2)*P23FRBa_NX end end conn1loc="axonLa" conn2loc="axonRa" addmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} RAXIAL {Rgap} Vm addmsg /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} RAXIAL {Rgap} Vm end float jnodecalcarg = {mynode}/sqrtNnodes jnodecalc = {trunc {jnodecalcarg} } jnodedex = {mynode} - {sqrtNnodes}*jnodecalc if ({dexN == -1} && {randconn < {globalconnprob}} && {dexE > 1} && { {mynode} >= {sqrtNnodes} }) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=(P23RSd_NY-1)*P23RSd_NX+j-1 float truncarg = (j-1)/2 conn2dex = (P23FRBa_NY-1)*P23FRBa_NX + {trunc {truncarg} } conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} - {sqrtNnodes}} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} - {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} + {sqrtNnodes}} RAXIAL {Rgap} Vm raddmsg@{{mynode} - {sqrtNnodes}} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end if ({dexN == -1} && {randconn < {globalconnprob}} && {dexE <= 2} && { {mynode} >= {sqrtNnodes} } && { {jnodedex} > 0 }) //for nodal edge corner conn1dex=i*P23RSd_NX+j conn2dex=(P23RSd_NY*P23RSd_NX)-1 conn2dex = (P23FRBa_NY*P23FRBa_NX)-1 conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} - {sqrtNnodes} - 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} - {sqrtNnodes} - 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} + {sqrtNnodes} + 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} - {sqrtNnodes} - 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end if ( {dexE == 1} && {dexN > -1} && {randconn < {globalconnprob}} && { {jnodedex} > 0 } ) //for nodal edge conn1dex=i*P23RSd_NX+j conn2dex=(i)*P23RSd_NX-1 float itest1arg = (i/2) itest1 = {trunc {itest1arg} } itest2 = {i} - 2*{itest1} if ({itest2==0}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-(i/2)*P23FRBa_NX end if ({itest2==1}) float conn2dexarg = conn2dex/2 conn2dex = {trunc {conn2dexarg} }-((i-1)/2)*P23FRBa_NX end conn1loc="axonLa" conn2loc="axonRa" raddmsg /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc}@{{mynode} - 1} RAXIAL {Rgap} Vm //pk raddmsg@{{mynode} - 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{{mynode} + 1} RAXIAL {Rgap} Vm raddmsg@{{mynode} - 1} /P23FRBanet/P23FRBa[{conn2dex}]/{conn2loc} /P23RSdnet/P23RSd[{conn1dex}]/{conn1loc}@{mynode} RAXIAL {Rgap} Vm end end end