// genesis

// Setting the axonal propagation velocity
float CABLE_VEL = 1	// scale factor = 1/(cable velocity) sec/meter

float destlim = {TCR_ST4RS_destlim}

/*
 * Usage :
 * volumeconnect source-path destination-path
 *		 [-relative]
 *		 [-sourcemask {box,ellipse} x1 y1 x2 y2]
 *		 [-sourcehole {box,ellipse} x1 y1 x2 y2]
 *		 [-destmask   {box,ellipse} x1 y1 x2 y2]
 *		 [-desthole   {box,ellipse} x1 y1 x2 y2]
 *		 [-probability p]
 */

echo Making connections from the TCR cells to the ST4RS cells.

//TCR - ST4RS AMPA

str s

//Load synapse location array

str locations = "distdendNlongb distdendNlongc distdendNlongd distdendNlonge distdendNlongf distdendNlongg distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendElongd distdendElonge distdendElongf distdendElongg distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSlongd distdendSlonge distdendSlongf distdendSlongg distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWlongd distdendWlonge distdendWlongf distdendWlongg distdendWmidb distdendWmidc distdendWshorta distdendWshortb"

foreach s ({arglist {locations}})

    rvolumeconnect /TCRnet/TCR[]/soma/spk20  \
	      /ST4RSnet/ST4RS[]/{s}/Ex_ch17TCRAMPA@all	    \
	      -relative			    \
	      -sourcemask box -1 -1  -1  1  1  1   \
	      -destmask   box -{destlim} -{destlim}  -1 {destlim}  {destlim}  1   \
          -probability 0.01923*{TCR_ST4RS_prob}

end

//TCR - ST4RS NMDA

str s

//Load synapse location array

str locations = "distdendNlongb distdendNlongc distdendNlongd distdendNlonge distdendNlongf distdendNlongg distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendElongd distdendElonge distdendElongf distdendElongg distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSlongd distdendSlonge distdendSlongf distdendSlongg distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWlongd distdendWlonge distdendWlongf distdendWlongg distdendWmidb distdendWmidc distdendWshorta distdendWshortb"

foreach s ({arglist {locations}})

    rvolumeconnect /TCRnet/TCR[]/soma/spk20  \
	      /ST4RSnet/ST4RS[]/{s}/Ex_ch17TCRNMDA@all	    \
	      -relative			    \
	      -sourcemask box -1 -1  -1  1  1  1   \
	      -destmask   box -{destlim} -{destlim}  -1 {destlim}  {destlim}  1   \
          -probability 0.01923*{TCR_ST4RS_prob}

end

echo Setting weights and delays for TCR->ST4RS connections.
// assigning delays using the volumedelay function

/* 
 * Usage :
 * volumedelay path 
 * [-fixed delay]
 * [-radial propagation_velocity] 
 * [-uniform range]   (not used here)
 * [-gaussian sd max] (not used here)
 * [-exp mid max]     (not used here)
 * [-absoluterandom]  (not used here)
 */

rvolumedelay /TCRnet/TCR[]/soma/spk20 -fixed  {TCR_ST4RS_axdelayCV} -add -gaussian {TCR_ST4RS_axdelaystdev} {TCR_ST4RS_axdelaymaxdev}

//TCR - ST4RS AMPA

str s

//Load synapse location array

str locations = "distdendNlongb distdendNlongc distdendNlongd distdendNlonge distdendNlongf distdendNlongg distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendElongd distdendElonge distdendElongf distdendElongg distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSlongd distdendSlonge distdendSlongf distdendSlongg distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWlongd distdendWlonge distdendWlongf distdendWlongg distdendWmidb distdendWmidc distdendWshorta distdendWshortb"

foreach s ({arglist {locations}})

    syndelay    /ST4RSnet/ST4RS[]/{s}/Ex_ch17TCRAMPA {TCR_ST4RS_syndelay} -add -gaussian {TCR_ST4RS_syndelaystdev} {TCR_ST4RS_syndelaymaxdev}

end

//TCR - ST4RS NMDA

str s

//Load synapse location array

str locations = "distdendNlongb distdendNlongc distdendNlongd distdendNlonge distdendNlongf distdendNlongg distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendElongd distdendElonge distdendElongf distdendElongg distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSlongd distdendSlonge distdendSlongf distdendSlongg distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWlongd distdendWlonge distdendWlongf distdendWlongg distdendWmidb distdendWmidc distdendWshorta distdendWshortb"

foreach s ({arglist {locations}})

    syndelay    /ST4RSnet/ST4RS[]/{s}/Ex_ch17TCRNMDA {TCR_ST4RS_syndelay} -add -gaussian {TCR_ST4RS_syndelaystdev} {TCR_ST4RS_syndelaymaxdev}

end

// assigning weights using the volumeweight function

/* 
 * Usage :
 *  volumeweight sourcepath 
 *          [-fixed weight]
 *          [-decay decay_rate max_weight min_weight]
 *          [-uniform range] 
 *          [-gaussian sd max] 
 *          [-exponential mid max]
 *          [-absoluterandom]
 */

rvolumeweight /TCRnet/TCR[]/soma/spk20 -decay {TCRdecayrate} {TCRmaxwgt} {TCRminwgt}