N=100000; % total simulation time, ms
sw=100; % duration of one sweep
dsw=100; % change of the sweep
av=round(N/sw); % number of sweeps
dt=0.1; %ms
% model parameters
c=217; i=0; gl=12.8;
el=-55.144; vt=-56.252;
delta=0.77; vreset=-68;
a=35.4; tauw=7.5; b=323;
% external intput
Am=10; % pA, optimal for inhibition
taus1=1.5; % ms, rise constant
taus2=10; % ms, decay constant
ts=50;
% number of spikes
A(1)=0;
tT=1; % delta bin, ms
bin=tT; % initial size of a bin, ms
vspike=0;
Ihold=-90;
sigma=50;
corr=2;
temp=0;
j=0;
k=0;
% random initial conditions
% variance = 5% of the mean
v(1)=-56.92;
w(1)=-63.08;
input(1)=Ihold;
t(1)=0;
% zero initial conditions for external stimuli
in(1)=0;
m(1)=0;
for i=2:1:round(N/dt)
t(i)=(i-1)*dt;
% additional stimulus
% delta function approximation
if t(i)==ts
stim(i)=1/dt;
else
stim(i)=0;
end;
% generate external stimuli
m(i)=dt/taus1/taus2*(Am*(1-in(i-1))*stim(i)/K(1/taus1,1/taus2)-in(i-1)-(taus1+taus2)*m(i-1)) + m(i-1);
in(i)=m(i)*dt + in(i-1);
% generate total stimuli
temp=temp-dt/corr*temp + sqrt(2*dt/corr)*random('normal',0,1,1,1);
input(i)=Ihold + temp*sigma + in(i);
% no dendrite
v(i)=dt/c*(-gl*(v(i-1)-el)+gl*delta*exp((v(i-1)-vt)/delta)-w(i-1)+input(i)) + v(i-1);
w(i)=dt/tauw*(a*(v(i-1)-el)-w(i-1)) + w(i-1);
% binning
if t(i)>=bin;
bin=bin + tT;
j=j+1;
if k==0 % check for the first sweep
A(j)=0;
end;
end;
% sweep
if t(i)>=sw;
ts=ts+dsw;
sw=sw + dsw;
j=1; % reset the bin number
k=1; % marker for the first sweep
% start from the down-state
v(i)=-56.92;
w(i)=-63.08;
end;
if v(i)>vspike
v(i-1)=0; % add sticks to the previous step
v(i)=vreset;
w(i)=w(i) + b;
% +1 spike to the bin
A(j)=A(j)+1/av/tT; % average number of spikes
end
end
save psthS50.mat