{
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   "cell_type": "code",
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   "source": [
    "## Importing Neuron \n",
    "\n",
    "from neuron import h ,gui\n",
    "h.load_file(\"stdrun.hoc\")\n",
    "\n",
    "from Classes_Alternate import Hu, Optrode\n",
    "cell = Hu()\n",
    "\n",
    "\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Soma photostimulation,  Fig S6.B \n",
    "# Run this cell --> load \"Alternate_Photostim_Soma.ses\" --> init and run\n",
    "# Default is light+scattering\n",
    "\n",
    "optrode1 = Optrode(h.soma[1]) \n",
    "\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Distal Axon photostimulation,  Fig S6. D\n",
    "# Run this cell --> load \"Alternate_Photostim_Distal_Axon.ses\" --> init and run\n",
    "# Default is scattered light\n",
    "\n",
    "optrode1 = Optrode(h.STIN[8]) "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Proximal Axon photostimulation,  Fig S6. C \n",
    "# Run this cell --> load \"Alternate_Photostim_Proximal_Axon.ses\" --> init and run\n",
    "# Default is scattered light.  \n",
    "\n",
    "optrode1 = Optrode(h.STIN[6]) "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Fig S6. A\n",
    "# Run this cell --> load \"Fig3A.ses\" --> init and run\n",
    "# Global blocking \n",
    "\n",
    "\n",
    "for i in range(0,17):\n",
    "    h.node[i].gbar_km=0.02\n",
    "    \n",
    "for i in range(0,33):\n",
    "    h.MYSA[i].gbar_km=0.0015\n",
    "    \n",
    "for i in range(0,33):\n",
    "    h.FLUT[i].gbar_km=0.0015\n",
    "    \n",
    "for i in range(0,17):\n",
    "    h.STIN[i].gbar_km=0.0015\n",
    "    \n",
    "\n",
    "h.soma[0].gbar_km=0.002\n",
    "h.soma[1].gbar_km=0.002\n",
    "h.hill[0].gbar_km=0.002\n",
    "h.ais[0].gbar_km=0.002\n",
    "    \n",
    "optrode1 = Optrode(h.STIN[8]) "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
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