// This function makes a list with all dendritic sections in the apical trunk
// written by Yiota Poirazi, July 2001, poirazi@LNC.usc.edu

objref apical_trunk_list
apical_trunk_list=new SectionList()

apical_dendrite[0]  apical_trunk_list.append() // 13.40  microns from soma 
apical_dendrite[4]  apical_trunk_list.append() // 46.03 (vertical distance)
apical_dendrite[6]  apical_trunk_list.append() // 45.75
apical_dendrite[14] apical_trunk_list.append() // 52.53
apical_dendrite[15] apical_trunk_list.append() // 58.97
apical_dendrite[16] apical_trunk_list.append() // 70.89
apical_dendrite[22] apical_trunk_list.append() // 72.93
apical_dendrite[23] apical_trunk_list.append() // 74.48
apical_dendrite[25] apical_trunk_list.append() // 93.56
apical_dendrite[26] apical_trunk_list.append() // 98.55
apical_dendrite[27] apical_trunk_list.append() // 121.89
apical_dendrite[41] apical_trunk_list.append() // 144.46
apical_dendrite[42] apical_trunk_list.append() // 142.81
apical_dendrite[46] apical_trunk_list.append() // 156.96
apical_dendrite[48] apical_trunk_list.append() // 162.99
apical_dendrite[56] apical_trunk_list.append() // 179.58
apical_dendrite[58] apical_trunk_list.append() // 180.11
apical_dendrite[60] apical_trunk_list.append() // 210.33
apical_dendrite[62] apical_trunk_list.append() // 222.80
apical_dendrite[64] apical_trunk_list.append() // 233.67
apical_dendrite[65] apical_trunk_list.append() // 252.71
apical_dendrite[69] apical_trunk_list.append() // 292.06
apical_dendrite[71] apical_trunk_list.append() // 324.53 
apical_dendrite[81] apical_trunk_list.append() // 346.84
apical_dendrite[83] apical_trunk_list.append() // 387.00
apical_dendrite[95] apical_trunk_list.append() // 413.05
apical_dendrite[103] apical_trunk_list.append() // 417.73
apical_dendrite[104] apical_trunk_list.append() // 423.75

/* Make a shape graph with apical trunk sections

objref apical_trunk_list_shape
apical_trunk_list_shape=new Shape()
color_index=3
apical_trunk_list_shape.color_list(apical_trunk_list,color_index)
apical_trunk_list_shape.printfile("apical-trunk-list.eps")
*/