/* Created by Language version: 6.0.2 */
/* NOT VECTORIZED */
#include <stdio.h>
#include <math.h>
#include "scoplib.h"
#undef PI
#include "md1redef.h"
#include "section.h"
#include "nrnoc_ml.h"
#include "md2redef.h"
#if METHOD3
extern int _method3;
#endif
#undef exp
#define exp hoc_Exp
extern double hoc_Exp();
/*SUPPRESS 761*/
/*SUPPRESS 762*/
/*SUPPRESS 763*/
/*SUPPRESS 765*/
extern double *getarg();
static double *_p; static Datum *_ppvar;
#define delta_t dt
#define Alpha _p[0]
#define Beta _p[1]
#define e _p[2]
#define iNMDA _p[3]
#define g _p[4]
#define gmax _p[5]
#define Ron _p[6]
#define Roff _p[7]
#define Rinf _p[8]
#define Rtau _p[9]
#define synon _p[10]
#define B _p[11]
#define DRon _p[12]
#define DRoff _p[13]
#define _g _p[14]
#define _tsav _p[15]
#define _nd_area *_ppvar[0].pval
#if MAC
#if !defined(v)
#define v _mlhv
#endif
#if !defined(h)
#define h _mlhh
#endif
#endif
static int hoc_nrnpointerindex = -1;
/* external NEURON variables */
extern double dt;
extern double t;
/* declaration of user functions */
static double _hoc_mgblock();
static int _mechtype;
extern int nrn_get_mechtype();
extern Prop* nrn_point_prop_;
static int _pointtype;
static void* _hoc_create_pnt(_ho) Object* _ho; { void* create_point_process();
return create_point_process(_pointtype, _ho);
}
static void _hoc_destroy_pnt();
static double _hoc_loc_pnt(_vptr) void* _vptr; {double loc_point_process();
return loc_point_process(_pointtype, _vptr);
}
static double _hoc_has_loc(_vptr) void* _vptr; {double has_loc_point();
return has_loc_point(_vptr);
}
static double _hoc_get_loc_pnt(_vptr)void* _vptr; {
double get_loc_point_process(); return (get_loc_point_process(_vptr));
}
static _hoc_setdata(_vptr) void* _vptr; { Prop* _prop;
_prop = ((Point_process*)_vptr)->_prop;
_p = _prop->param; _ppvar = _prop->dparam;
}
/* connect user functions to hoc names */
static IntFunc hoc_intfunc[] = {
0,0
};
static struct Member_func {
char* _name; double (*_member)();} _member_func[] = {
"loc", _hoc_loc_pnt,
"has_loc", _hoc_has_loc,
"get_loc", _hoc_get_loc_pnt,
"mgblock", _hoc_mgblock,
0, 0
};
#define _f_mgblock _f_mgblock_NMDAb
#define mgblock mgblock_NMDAb
extern double _f_mgblock();
extern double mgblock();
/* declare global and static user variables */
#define Cmax Cmax_NMDAb
double Cmax = 1;
#define Cdur Cdur_NMDAb
double Cdur = 1.1;
#define mg mg_NMDAb
double mg = 1;
#define usetable usetable_NMDAb
double usetable = 1;
/* some parameters have upper and lower limits */
static HocParmLimits _hoc_parm_limits[] = {
"usetable_NMDAb", 0, 1,
0,0,0
};
static HocParmUnits _hoc_parm_units[] = {
"Cmax_NMDAb", "mM",
"Cdur_NMDAb", "ms",
"mg_NMDAb", "mM",
"Alpha", "/ms",
"Beta", "/ms",
"e", "mV",
"iNMDA", "nA",
"g", "umho",
0,0
};
static double Roff0 = 0;
static double Ron0 = 0;
static double v = 0;
/* connect global user variables to hoc */
static DoubScal hoc_scdoub[] = {
"Cmax_NMDAb", &Cmax,
"Cdur_NMDAb", &Cdur,
"mg_NMDAb", &mg,
"usetable_NMDAb", &usetable,
0,0
};
static DoubVec hoc_vdoub[] = {
0,0,0
};
static double _sav_indep;
static nrn_alloc(), nrn_init(), nrn_state();
static nrn_cur(), nrn_jacob();
static void _hoc_destroy_pnt(_vptr) void* _vptr; {
destroy_point_process(_vptr);
}
static int _ode_count(), _ode_map(), _ode_spec(), _ode_matsol();
extern int nrn_cvode_;
#define _cvode_ieq _ppvar[3]._i
/* connect range variables in _p that hoc is supposed to know about */
static char *_mechanism[] = {
"6.0.2",
"NMDAb",
"Alpha",
"Beta",
"e",
0,
"iNMDA",
"g",
"gmax",
0,
"Ron",
"Roff",
0,
0};
static nrn_alloc(_prop)
Prop *_prop;
{
Prop *prop_ion, *need_memb();
double *_p; Datum *_ppvar;
if (nrn_point_prop_) {
_p = nrn_point_prop_->param;
_ppvar = nrn_point_prop_->dparam;
}else{
_p = nrn_prop_data_alloc(_mechtype, 16);
/*initialize range parameters*/
Alpha = 10;
Beta = 0.0125;
e = 0;
}
_prop->param = _p;
_prop->param_size = 16;
if (!nrn_point_prop_) {
_ppvar = nrn_prop_datum_alloc(_mechtype, 4);
}
_prop->dparam = _ppvar;
/*connect ionic variables to this model*/
}
static _initlists();
/* some states have an absolute tolerance */
static Symbol** _atollist;
static HocStateTolerance _hoc_state_tol[] = {
0,0
};
#define _tqitem &(_ppvar[2]._pvoid)
static _net_receive();
typedef (*_Pfrv)();
extern _Pfrv* pnt_receive;
extern short* pnt_receive_size;
_NMDAb_reg() {
int _vectorized = 0;
_initlists();
_pointtype = point_register_mech(_mechanism,
nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init,
hoc_nrnpointerindex,
_hoc_create_pnt, _hoc_destroy_pnt, _member_func,
_vectorized);
_mechtype = nrn_get_mechtype(_mechanism[1]);
hoc_register_dparam_size(_mechtype, 4);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
pnt_receive[_mechtype] = _net_receive;
pnt_receive_size[_mechtype] = 5;
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 NMDAb /home/jg/ModelosNeuron/ProgramsNeuronCA1_JG/CleanVersion_CA1_JG_15Mar09/mechanism/x86_64/NMDAb.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
static double *_t_mgblock;
static int _reset;
static char *modelname = "simple NMDA receptors";
static int error;
static int _ninits = 0;
static int _match_recurse=1;
static _modl_cleanup(){ _match_recurse=1;}
static int _ode_spec1(), _ode_matsol1();
extern int state_discon_flag_;
static _check_mgblock();
static double _n_mgblock();
static int _slist1[2], _dlist1[2];
static int release();
/*CVODE*/
static int _ode_spec1 () {_reset=0;
{
DRon = ( synon * Rinf - Ron ) / Rtau ;
DRoff = - Beta * Roff ;
}
return _reset;
}
static int _ode_matsol1() {
DRon = DRon / (1. - dt*( ( ( ( - 1.0 ) ) ) / Rtau )) ;
DRoff = DRoff / (1. - dt*( (- Beta)*(1.0) )) ;
}
/*END CVODE*/
static int release () {_reset=0;
{
Ron = Ron + (1. - exp(dt*(( ( ( - 1.0 ) ) ) / Rtau)))*(- ( ( ( (synon)*(Rinf) ) ) / Rtau ) / ( ( ( ( - 1.0) ) ) / Rtau ) - Ron) ;
Roff = Roff + (1. - exp(dt*((- Beta)*(1.0))))*(- ( 0.0 ) / ( (- Beta)*(1.0) ) - Roff) ;
}
return 0;
}
static double _mfac_mgblock, _tmin_mgblock;
static _check_mgblock() {
static int _maktable=1; int _i, _j, _ix = 0;
double _xi, _tmax;
static double _sav_mg;
if (!usetable) {return;}
if (_sav_mg != mg) { _maktable = 1;}
if (_maktable) { double _x, _dx; _maktable=0;
_tmin_mgblock = - 140.0 ;
_tmax = 80.0 ;
_dx = (_tmax - _tmin_mgblock)/1000.; _mfac_mgblock = 1./_dx;
for (_i=0, _x=_tmin_mgblock; _i < 1001; _x += _dx, _i++) {
_t_mgblock[_i] = _f_mgblock(_x);
}
_sav_mg = mg;
}
}
double mgblock(_lv) double _lv;{ _check_mgblock();
return _n_mgblock(_lv);
}
static double _n_mgblock(_lv) double _lv;{ int _i, _j;
double _xi, _theta;
if (!usetable) {
return _f_mgblock(_lv);
}
_xi = _mfac_mgblock * (_lv - _tmin_mgblock);
_i = (int) _xi;
if (_xi <= 0.) {
return _t_mgblock[0];
}
if (_i >= 1000) {
return _t_mgblock[1000];
}
return _t_mgblock[_i] + (_xi - (double)_i)*(_t_mgblock[_i+1] - _t_mgblock[_i]);
}
double _f_mgblock ( _lv )
double _lv ;
{
double _lmgblock;
_lmgblock = 1.0 / ( 1.0 + exp ( 0.062 * - _lv ) * ( mg / 3.57 ) ) ;
return _lmgblock;
}
static double _hoc_mgblock(_vptr) void* _vptr; {
double _r;
_hoc_setdata(_vptr);
_r = mgblock ( *getarg(1) ) ;
return(_r);
}
static _net_receive (_pnt, _args, _lflag) Point_process* _pnt; double* _args; double _lflag;
{ _p = _pnt->_prop->param; _ppvar = _pnt->_prop->dparam;
if (_tsav > t){ extern char* hoc_object_name(); hoc_execerror(hoc_object_name(_pnt->ob), ":Event arrived out of order. Must call ParallelContext.set_maxstep AFTER assigning minimum NetCon.delay");}
_tsav = t; if (_lflag == 1. ) {*(_tqitem) = 0;}
{
if ( _lflag == 0.0 ) {
_args[2] = _args[2] + 1.0 ;
if ( ! _args[1] ) {
_args[3] = _args[3] * exp ( - Beta * ( t - _args[4] ) ) ;
_args[4] = t ;
_args[1] = 1.0 ;
synon = synon + _args[0] ;
state_discontinuity ( _cvode_ieq + 0, & Ron , Ron + _args[3] ) ;
state_discontinuity ( _cvode_ieq + 1, & Roff , Roff - _args[3] ) ;
}
net_send ( _tqitem, _args, _pnt, Cdur , _args[2] ) ;
}
if ( _lflag == _args[2] ) {
_args[3] = _args[0] * Rinf + ( _args[3] - _args[0] * Rinf ) * exp ( - ( t - _args[4] ) / Rtau ) ;
_args[4] = t ;
synon = synon - _args[0] ;
state_discontinuity ( _cvode_ieq + 0, & Ron , Ron - _args[3] ) ;
state_discontinuity ( _cvode_ieq + 1, & Roff , Roff + _args[3] ) ;
_args[1] = 0.0 ;
}
gmax = _args[0] ;
} }
static int _ode_count(_type) int _type;{ return 2;}
static int _ode_spec(_nd, _pp, _ppd) Node* _nd; double* _pp; Datum* _ppd; {
_p = _pp; _ppvar = _ppd; v = NODEV(_nd);
_ode_spec1();
}
static int _ode_map(_ieq, _pv, _pvdot, _pp, _ppd, _atol, _type) int _ieq, _type; double** _pv, **_pvdot, *_pp, *_atol; Datum* _ppd; {
int _i; _p = _pp; _ppvar = _ppd;
_cvode_ieq = _ieq;
for (_i=0; _i < 2; ++_i) {
_pv[_i] = _pp + _slist1[_i]; _pvdot[_i] = _pp + _dlist1[_i];
_cvode_abstol(_atollist, _atol, _i);
}
}
static int _ode_matsol(_nd, _pp, _ppd) Node* _nd; double* _pp; Datum* _ppd; {
_p = _pp; _ppvar = _ppd; v = NODEV(_nd);
_ode_matsol1();
}
static initmodel() {
int _i; double _save;_ninits++;
_save = t;
t = 0.0;
{
Roff = Roff0;
Ron = Ron0;
{
Rinf = Cmax * Alpha / ( Cmax * Alpha + Beta ) ;
Rtau = 1.0 / ( Cmax * Alpha + Beta ) ;
synon = 0.0 ;
}
_sav_indep = t; t = _save;
}
}
static nrn_init(_ml, _type) _Memb_list* _ml; int _type;{
Node *_nd; double _v; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
_tsav = -1e20;
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
v = _v;
initmodel();
}}
static double _nrn_current(_v) double _v;{double _current=0.;v=_v;{ {
B = mgblock ( v ) ;
g = ( Ron + Roff ) * 1.0 * B ;
iNMDA = g * ( v - e ) ;
}
_current += iNMDA;
} return _current;
}
static nrn_cur(_ml, _type) _Memb_list* _ml; int _type;{
Node *_nd; int* _ni; double _rhs, _v; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
_g = _nrn_current(_v + .001);
{ state_discon_flag_ = 1; _rhs = _nrn_current(_v); state_discon_flag_ = 0;
}
_g = (_g - _rhs)/.001;
_g *= 1.e2/(_nd_area);
_rhs *= 1.e2/(_nd_area);
#if CACHEVEC
if (use_cachevec) {
VEC_RHS(_ni[_iml]) -= _rhs;
}else
#endif
{
NODERHS(_nd) -= _rhs;
}
}}
static nrn_jacob(_ml, _type) _Memb_list* _ml; int _type;{
Node *_nd; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml];
#if CACHEVEC
if (use_cachevec) {
VEC_D(_ni[_iml]) += _g;
}else
#endif
{
_nd = _ml->_nodelist[_iml];
NODED(_nd) += _g;
}
}}
static nrn_state(_ml, _type) _Memb_list* _ml; int _type;{
double _break, _save;
Node *_nd; double _v; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
_nd = _ml->_nodelist[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
_break = t + .5*dt; _save = t; delta_t = dt;
v=_v;
{
{ {
for (; t < _break; t += delta_t) {
error = release();
if(error){fprintf(stderr,"at line 105 in file NMDAb.mod:\n SOLVE release METHOD cnexp\n"); nrn_complain(_p); abort_run(error);}
}}
t = _save;
}}}
}
static terminal(){}
static _initlists() {
int _i; static int _first = 1;
if (!_first) return;
_slist1[0] = &(Ron) - _p; _dlist1[0] = &(DRon) - _p;
_slist1[1] = &(Roff) - _p; _dlist1[1] = &(DRoff) - _p;
_t_mgblock = makevector(1001*sizeof(double));
_first = 0;
}