/* Created by Language version: 6.0.2 */
/* NOT VECTORIZED */
#include <stdio.h>
#include <math.h>
#include "scoplib.h"
#undef PI
#include "md1redef.h"
#include "section.h"
#include "nrnoc_ml.h"
#include "md2redef.h"
#if METHOD3
extern int _method3;
#endif
#undef exp
#define exp hoc_Exp
extern double hoc_Exp();
/*SUPPRESS 761*/
/*SUPPRESS 762*/
/*SUPPRESS 763*/
/*SUPPRESS 765*/
extern double *getarg();
static double *_p; static Datum *_ppvar;
#define delta_t dt
#define ar2 _p[0]
#define gnabar _p[1]
#define gkbar _p[2]
#define gl _p[3]
#define el _p[4]
#define ina _p[5]
#define ik _p[6]
#define il _p[7]
#define m _p[8]
#define h _p[9]
#define n _p[10]
#define s _p[11]
#define ena _p[12]
#define ek _p[13]
#define Dm _p[14]
#define Dh _p[15]
#define Dn _p[16]
#define Ds _p[17]
#define _g _p[18]
#define _ion_ena *_ppvar[0].pval
#define _ion_ina *_ppvar[1].pval
#define _ion_dinadv *_ppvar[2].pval
#define _ion_ek *_ppvar[3].pval
#define _ion_ik *_ppvar[4].pval
#define _ion_dikdv *_ppvar[5].pval
#if MAC
#if !defined(v)
#define v _mlhv
#endif
#if !defined(h)
#define h _mlhh
#endif
#endif
static int hoc_nrnpointerindex = -1;
/* external NEURON variables */
extern double celsius;
extern double dt;
extern double t;
/* declaration of user functions */
static int _hoc_alpv();
static int _hoc_alpr();
static int _hoc_betr();
static int _hoc_rates();
static int _hoc_varss();
static int _hoc_vartau();
static int _mechtype;
extern int nrn_get_mechtype();
static _hoc_setdata() {
Prop *_prop, *hoc_getdata_range();
_prop = hoc_getdata_range("hha2");
_p = _prop->param; _ppvar = _prop->dparam;
ret(1.);
}
/* connect user functions to hoc names */
static IntFunc hoc_intfunc[] = {
"setdata_hha2", _hoc_setdata,
"alpv_hha2", _hoc_alpv,
"alpr_hha2", _hoc_alpr,
"betr_hha2", _hoc_betr,
"rates_hha2", _hoc_rates,
"varss_hha2", _hoc_varss,
"vartau_hha2", _hoc_vartau,
0, 0
};
#define alpv alpv_hha2
#define alpr alpr_hha2
#define betr betr_hha2
#define varss varss_hha2
#define vartau vartau_hha2
extern double alpv();
extern double alpr();
extern double betr();
extern double varss();
extern double vartau();
/* declare global and static user variables */
#define a0r a0r_hha2
double a0r = 0.0003;
#define b0r b0r_hha2
double b0r = 0.0003;
#define gmr gmr_hha2
double gmr = 0.2;
#define inf inf_hha2
double inf[4];
#define taumin taumin_hha2
double taumin = 3;
#define tau tau_hha2
double tau[4];
#define vvh vvh_hha2
double vvh = -58;
#define vhalfr vhalfr_hha2
double vhalfr = -60;
#define vvs vvs_hha2
double vvs = 2;
#define zetas zetas_hha2
double zetas = 12;
#define zetar zetar_hha2
double zetar = 12;
/* some parameters have upper and lower limits */
static HocParmLimits _hoc_parm_limits[] = {
0,0,0
};
static HocParmUnits _hoc_parm_units[] = {
"a0r_hha2", "/ms",
"b0r_hha2", "/ms",
"taumin_hha2", "ms",
"vvs_hha2", "mV",
"vhalfr_hha2", "mV",
"vvh_hha2", "mV",
"tau_hha2", "ms",
"gnabar_hha2", "mho/cm2",
"gkbar_hha2", "mho/cm2",
"gl_hha2", "mho/cm2",
"el_hha2", "mV",
"ina_hha2", "mA/cm2",
"ik_hha2", "mA/cm2",
"il_hha2", "mA/cm2",
0,0
};
static double h0 = 0;
static double m0 = 0;
static double n0 = 0;
static double s0 = 0;
static double v = 0;
/* connect global user variables to hoc */
static DoubScal hoc_scdoub[] = {
"a0r_hha2", &a0r,
"b0r_hha2", &b0r,
"zetar_hha2", &zetar,
"zetas_hha2", &zetas,
"gmr_hha2", &gmr,
"taumin_hha2", &taumin,
"vvs_hha2", &vvs,
"vhalfr_hha2", &vhalfr,
"vvh_hha2", &vvh,
0,0
};
static DoubVec hoc_vdoub[] = {
"inf_hha2", inf, 4,
"tau_hha2", tau, 4,
0,0,0
};
static double _sav_indep;
static nrn_alloc(), nrn_init(), nrn_state();
static nrn_cur(), nrn_jacob();
static int _ode_count(), _ode_map(), _ode_spec(), _ode_matsol();
extern int nrn_cvode_;
#define _cvode_ieq _ppvar[6]._i
/* connect range variables in _p that hoc is supposed to know about */
static char *_mechanism[] = {
"6.0.2",
"hha2",
"ar2_hha2",
"gnabar_hha2",
"gkbar_hha2",
"gl_hha2",
"el_hha2",
0,
"ina_hha2",
"ik_hha2",
"il_hha2",
0,
"m_hha2",
"h_hha2",
"n_hha2",
"s_hha2",
0,
0};
static Symbol* _na_sym;
static Symbol* _k_sym;
static nrn_alloc(_prop)
Prop *_prop;
{
Prop *prop_ion, *need_memb();
double *_p; Datum *_ppvar;
_p = nrn_prop_data_alloc(_mechtype, 19);
/*initialize range parameters*/
ar2 = 1;
gnabar = 0;
gkbar = 0;
gl = 0;
el = -70;
_prop->param = _p;
_prop->param_size = 19;
_ppvar = nrn_prop_datum_alloc(_mechtype, 7);
_prop->dparam = _ppvar;
/*connect ionic variables to this model*/
prop_ion = need_memb(_na_sym);
nrn_promote(prop_ion, 0, 1);
_ppvar[0].pval = &prop_ion->param[0]; /* ena */
_ppvar[1].pval = &prop_ion->param[3]; /* ina */
_ppvar[2].pval = &prop_ion->param[4]; /* _ion_dinadv */
prop_ion = need_memb(_k_sym);
nrn_promote(prop_ion, 0, 1);
_ppvar[3].pval = &prop_ion->param[0]; /* ek */
_ppvar[4].pval = &prop_ion->param[3]; /* ik */
_ppvar[5].pval = &prop_ion->param[4]; /* _ion_dikdv */
}
static _initlists();
/* some states have an absolute tolerance */
static Symbol** _atollist;
static HocStateTolerance _hoc_state_tol[] = {
0,0
};
_hha2_reg() {
int _vectorized = 0;
_initlists();
ion_reg("na", -10000.);
ion_reg("k", -10000.);
_na_sym = hoc_lookup("na_ion");
_k_sym = hoc_lookup("k_ion");
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, _vectorized);
_mechtype = nrn_get_mechtype(_mechanism[1]);
hoc_register_dparam_size(_mechtype, 7);
hoc_register_cvode(_mechtype, _ode_count, _ode_map, _ode_spec, _ode_matsol);
hoc_register_tolerance(_mechtype, _hoc_state_tol, &_atollist);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 hha2 /home/jg/ModelosNeuron/ProgramsNeuronCA1_JG/CleanVersion_CA1_JG_15Mar09/mechanism/x86_64/hha2.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
static int _reset;
static char *modelname = "HH channel that includes both a sodium and a delayed rectifier channel";
static int error;
static int _ninits = 0;
static int _match_recurse=1;
static _modl_cleanup(){ _match_recurse=1;}
static rates();
static int _ode_spec1(), _ode_matsol1();
static int _slist1[4], _dlist1[4];
static int states();
/*CVODE*/
static int _ode_spec1 () {_reset=0;
{
rates ( v , ar2 ) ;
Dm = ( inf [ 0 ] - m ) / tau [ 0 ] ;
Dh = ( inf [ 1 ] - h ) / tau [ 1 ] ;
Dn = ( inf [ 2 ] - n ) / tau [ 2 ] ;
Ds = ( inf [ 3 ] - s ) / tau [ 3 ] ;
}
return _reset;
}
static int _ode_matsol1() {
rates ( v , ar2 ) ;
Dm = Dm / (1. - dt*( ( ( ( - 1.0 ) ) ) / tau[0] )) ;
Dh = Dh / (1. - dt*( ( ( ( - 1.0 ) ) ) / tau[1] )) ;
Dn = Dn / (1. - dt*( ( ( ( - 1.0 ) ) ) / tau[2] )) ;
Ds = Ds / (1. - dt*( ( ( ( - 1.0 ) ) ) / tau[3] )) ;
}
/*END CVODE*/
static int states () {_reset=0;
{
rates ( v , ar2 ) ;
m = m + (1. - exp(dt*(( ( ( - 1.0 ) ) ) / tau[0])))*(- ( ( ( inf[0] ) ) / tau[0] ) / ( ( ( ( - 1.0) ) ) / tau[0] ) - m) ;
h = h + (1. - exp(dt*(( ( ( - 1.0 ) ) ) / tau[1])))*(- ( ( ( inf[1] ) ) / tau[1] ) / ( ( ( ( - 1.0) ) ) / tau[1] ) - h) ;
n = n + (1. - exp(dt*(( ( ( - 1.0 ) ) ) / tau[2])))*(- ( ( ( inf[2] ) ) / tau[2] ) / ( ( ( ( - 1.0) ) ) / tau[2] ) - n) ;
s = s + (1. - exp(dt*(( ( ( - 1.0 ) ) ) / tau[3])))*(- ( ( ( inf[3] ) ) / tau[3] ) / ( ( ( ( - 1.0) ) ) / tau[3] ) - s) ;
}
return 0;
}
static int rates ( _lv , _la2 )
double _lv , _la2 ;
{
double _ltmp , _lc ;
{int _li ;for ( _li = 0 ; _li <= 2 ; _li ++ ) {
tau [ _li ] = vartau ( _lv , ((double) _li ) ) ;
inf [ _li ] = varss ( _lv , ((double) _li ) ) ;
} }
tau [ 3 ] = betr ( _lv ) / ( a0r * ( 1.0 + alpr ( _lv ) ) ) ;
if ( tau [ 3 ] < taumin ) {
tau [ 3 ] = taumin ;
}
_lc = alpv ( _lv ) ;
inf [ 3 ] = _lc + _la2 * ( 1.0 - _lc ) ;
return 0; }
static int _hoc_rates() {
double _r;
_r = 1.;
rates ( *getarg(1) , *getarg(2) ) ;
ret(_r);
}
double varss ( _lv , _li )
double _lv , _li ;
{
double _lvarss;
if ( _li == 0.0 ) {
_lvarss = 1.0 / ( 1.0 + exp ( ( _lv + 44.0 ) / ( - 3.0 ) ) ) ;
}
else if ( _li == 1.0 ) {
_lvarss = 1.0 / ( 1.0 + exp ( ( _lv + 49.0 ) / ( 3.5 ) ) ) ;
}
else if ( _li == 2.0 ) {
_lvarss = 1.0 / ( 1.0 + exp ( ( _lv + 46.3 ) / ( - 3.0 ) ) ) ;
}
return _lvarss;
}
static int _hoc_varss() {
double _r;
_r = varss ( *getarg(1) , *getarg(2) ) ;
ret(_r);
}
double alpv ( _lv )
double _lv ;
{
double _lalpv;
_lalpv = 1.0 / ( 1.0 + exp ( ( _lv - vvh ) / vvs ) ) ;
return _lalpv;
}
static int _hoc_alpv() {
double _r;
_r = alpv ( *getarg(1) ) ;
ret(_r);
}
double alpr ( _lv )
double _lv ;
{
double _lalpr;
_lalpr = exp ( 1.e-3 * zetar * ( _lv - vhalfr ) * 9.648e4 / ( 8.315 * ( 273.16 + celsius ) ) ) ;
return _lalpr;
}
static int _hoc_alpr() {
double _r;
_r = alpr ( *getarg(1) ) ;
ret(_r);
}
double betr ( _lv )
double _lv ;
{
double _lbetr;
_lbetr = exp ( 1.e-3 * zetar * gmr * ( _lv - vhalfr ) * 9.648e4 / ( 8.315 * ( 273.16 + celsius ) ) ) ;
return _lbetr;
}
static int _hoc_betr() {
double _r;
_r = betr ( *getarg(1) ) ;
ret(_r);
}
double vartau ( _lv , _li )
double _lv , _li ;
{
double _lvartau;
double _ltmp ;
if ( _li == 0.0 ) {
_lvartau = 0.05 ;
}
else if ( _li == 1.0 ) {
_lvartau = 1.0 ;
}
else if ( _li == 2.0 ) {
_lvartau = 3.5 ;
}
return _lvartau;
}
static int _hoc_vartau() {
double _r;
_r = vartau ( *getarg(1) , *getarg(2) ) ;
ret(_r);
}
static int _ode_count(_type) int _type;{ return 4;}
static int _ode_spec(_nd, _pp, _ppd) Node* _nd; double* _pp; Datum* _ppd; {
_p = _pp; _ppvar = _ppd; v = NODEV(_nd);
ena = _ion_ena;
ek = _ion_ek;
_ode_spec1();
}
static int _ode_map(_ieq, _pv, _pvdot, _pp, _ppd, _atol, _type) int _ieq, _type; double** _pv, **_pvdot, *_pp, *_atol; Datum* _ppd; {
int _i; _p = _pp; _ppvar = _ppd;
_cvode_ieq = _ieq;
for (_i=0; _i < 4; ++_i) {
_pv[_i] = _pp + _slist1[_i]; _pvdot[_i] = _pp + _dlist1[_i];
_cvode_abstol(_atollist, _atol, _i);
}
}
static int _ode_matsol(_nd, _pp, _ppd) Node* _nd; double* _pp; Datum* _ppd; {
_p = _pp; _ppvar = _ppd; v = NODEV(_nd);
ena = _ion_ena;
ek = _ion_ek;
_ode_matsol1();
}
static initmodel() {
int _i; double _save;_ninits++;
_save = t;
t = 0.0;
{
h = h0;
m = m0;
n = n0;
s = s0;
{
rates ( v , ar2 ) ;
m = inf [ 0 ] ;
h = inf [ 1 ] ;
n = inf [ 2 ] ;
s = inf [ 3 ] ;
}
_sav_indep = t; t = _save;
}
}
static nrn_init(_ml, _type) _Memb_list* _ml; int _type;{
Node *_nd; double _v; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
v = _v;
ena = _ion_ena;
ek = _ion_ek;
initmodel();
}}
static double _nrn_current(_v) double _v;{double _current=0.;v=_v;{ {
ina = gnabar * m * m * h * s * ( v - ena ) ;
ik = gkbar * n * n * ( v - ek ) ;
il = gl * ( v - el ) ;
}
_current += ina;
_current += ik;
_current += il;
} return _current;
}
static nrn_cur(_ml, _type) _Memb_list* _ml; int _type;{
Node *_nd; int* _ni; double _rhs, _v; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
ena = _ion_ena;
ek = _ion_ek;
_g = _nrn_current(_v + .001);
{ static double _dik;
static double _dina;
_dina = ina;
_dik = ik;
_rhs = _nrn_current(_v);
_ion_dinadv += (_dina - ina)/.001 ;
_ion_dikdv += (_dik - ik)/.001 ;
}
_g = (_g - _rhs)/.001;
_ion_ina += ina ;
_ion_ik += ik ;
#if CACHEVEC
if (use_cachevec) {
VEC_RHS(_ni[_iml]) -= _rhs;
}else
#endif
{
NODERHS(_nd) -= _rhs;
}
}}
static nrn_jacob(_ml, _type) _Memb_list* _ml; int _type;{
Node *_nd; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml];
#if CACHEVEC
if (use_cachevec) {
VEC_D(_ni[_iml]) += _g;
}else
#endif
{
_nd = _ml->_nodelist[_iml];
NODED(_nd) += _g;
}
}}
static nrn_state(_ml, _type) _Memb_list* _ml; int _type;{
double _break, _save;
Node *_nd; double _v; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
_nd = _ml->_nodelist[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
_break = t + .5*dt; _save = t; delta_t = dt;
v=_v;
{
ena = _ion_ena;
ek = _ion_ek;
{ {
for (; t < _break; t += delta_t) {
error = states();
if(error){fprintf(stderr,"at line 79 in file hha2.mod:\n SOLVE states METHOD cnexp\n"); nrn_complain(_p); abort_run(error);}
}}
t = _save;
} }}
}
static terminal(){}
static _initlists() {
int _i; static int _first = 1;
if (!_first) return;
_slist1[0] = &(m) - _p; _dlist1[0] = &(Dm) - _p;
_slist1[1] = &(h) - _p; _dlist1[1] = &(Dh) - _p;
_slist1[2] = &(n) - _p; _dlist1[2] = &(Dn) - _p;
_slist1[3] = &(s) - _p; _dlist1[3] = &(Ds) - _p;
_first = 0;
}