This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by pt_module configure 1.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ /home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/configure --with-nest=/home/fiebig/Programs/nest-2.4.2-build/bin/nest-config --prefix=/home/fiebig/Desktop/BCPNN-Module/
## --------- ##
## Platform. ##
## --------- ##
hostname = ubuntu
uname -m = x86_64
uname -r = 3.13.0-39-generic
uname -s = Linux
uname -v = #66-Ubuntu SMP Tue Oct 28 13:30:27 UTC 2014
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /usr/local/games
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2433: checking for a BSD-compatible install
configure:2501: result: /usr/bin/install -c
configure:2512: checking whether build environment is sane
configure:2567: result: yes
configure:2718: checking for a thread-safe mkdir -p
configure:2757: result: /bin/mkdir -p
configure:2764: checking for gawk
configure:2794: result: no
configure:2764: checking for mawk
configure:2780: found /usr/bin/mawk
configure:2791: result: mawk
configure:2802: checking whether make sets $(MAKE)
configure:2824: result: yes
configure:2853: checking whether make supports nested variables
configure:2870: result: yes
configure:3002: checking build system type
configure:3016: result: x86_64-unknown-linux-gnu
configure:3036: checking host system type
configure:3049: result: x86_64-unknown-linux-gnu
configure:3100: checking for nest-config
configure:3103: checking for /home/fiebig/Programs/nest-2.4.2-build/bin/nest-config
configure:3117: result: yes
configure:3125: result: found
configure:3130: checking for NEST directory information
configure:3136: result: -I/home/fiebig/Programs/nest-2.4.2-build/libnestutil -I/home/fiebig/Downloads/nest-2.4.2/{libnestutil,librandom,sli,nestkernel,nest,topology} -fopenmp
configure:3170: checking for style of include used by make
configure:3198: result: GNU
configure:3269: checking for gcc
configure:3285: found /usr/bin/gcc
configure:3296: result: gcc
configure:3525: checking for C compiler version
configure:3534: gcc --version >&5
gcc (Ubuntu 4.8.2-19ubuntu1) 4.8.2
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3545: $? = 0
configure:3534: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1)
configure:3545: $? = 0
configure:3534: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3545: $? = 4
configure:3534: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:3545: $? = 4
configure:3565: checking whether the C compiler works
configure:3587: gcc conftest.c >&5
configure:3591: $? = 0
configure:3639: result: yes
configure:3642: checking for C compiler default output file name
configure:3644: result: a.out
configure:3650: checking for suffix of executables
configure:3657: gcc -o conftest conftest.c >&5
configure:3661: $? = 0
configure:3683: result:
configure:3705: checking whether we are cross compiling
configure:3713: gcc -o conftest conftest.c >&5
configure:3717: $? = 0
configure:3724: ./conftest
configure:3728: $? = 0
configure:3743: result: no
configure:3748: checking for suffix of object files
configure:3770: gcc -c conftest.c >&5
configure:3774: $? = 0
configure:3795: result: o
configure:3799: checking whether we are using the GNU C compiler
configure:3818: gcc -c conftest.c >&5
configure:3818: $? = 0
configure:3827: result: yes
configure:3836: checking whether gcc accepts -g
configure:3856: gcc -c -g conftest.c >&5
configure:3856: $? = 0
configure:3897: result: yes
configure:3914: checking for gcc option to accept ISO C89
configure:3977: gcc -c -g -O2 conftest.c >&5
configure:3977: $? = 0
configure:3990: result: none needed
configure:4015: checking whether gcc understands -c and -o together
configure:4037: gcc -c conftest.c -o conftest2.o
configure:4040: $? = 0
configure:4037: gcc -c conftest.c -o conftest2.o
configure:4040: $? = 0
configure:4052: result: yes
configure:4071: checking dependency style of gcc
configure:4182: result: gcc3
configure:4203: checking how to run the C preprocessor
configure:4234: gcc -E conftest.c
configure:4234: $? = 0
configure:4248: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:4248: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "pt_module"
| #define PACKAGE_TARNAME "pt_module"
| #define PACKAGE_VERSION "1.0"
| #define PACKAGE_STRING "pt_module 1.0"
| #define PACKAGE_BUGREPORT "nest_user@nest-initiative.org"
| #define PACKAGE_URL ""
| #define PACKAGE "nest"
| #define VERSION ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4273: result: gcc -E
configure:4293: gcc -E conftest.c
configure:4293: $? = 0
configure:4307: gcc -E conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:4307: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "pt_module"
| #define PACKAGE_TARNAME "pt_module"
| #define PACKAGE_VERSION "1.0"
| #define PACKAGE_STRING "pt_module 1.0"
| #define PACKAGE_BUGREPORT "nest_user@nest-initiative.org"
| #define PACKAGE_URL ""
| #define PACKAGE "nest"
| #define VERSION ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4336: checking for grep that handles long lines and -e
configure:4394: result: /bin/grep
configure:4399: checking for egrep
configure:4461: result: /bin/grep -E
configure:4466: checking for ANSI C header files
configure:4486: gcc -c -g -O2 conftest.c >&5
configure:4486: $? = 0
configure:4559: gcc -o conftest -g -O2 conftest.c >&5
configure:4559: $? = 0
configure:4559: ./conftest
configure:4559: $? = 0
configure:4570: result: yes
configure:4583: checking for sys/types.h
configure:4583: gcc -c -g -O2 conftest.c >&5
configure:4583: $? = 0
configure:4583: result: yes
configure:4583: checking for sys/stat.h
configure:4583: gcc -c -g -O2 conftest.c >&5
configure:4583: $? = 0
configure:4583: result: yes
configure:4583: checking for stdlib.h
configure:4583: gcc -c -g -O2 conftest.c >&5
configure:4583: $? = 0
configure:4583: result: yes
configure:4583: checking for string.h
configure:4583: gcc -c -g -O2 conftest.c >&5
configure:4583: $? = 0
configure:4583: result: yes
configure:4583: checking for memory.h
configure:4583: gcc -c -g -O2 conftest.c >&5
configure:4583: $? = 0
configure:4583: result: yes
configure:4583: checking for strings.h
configure:4583: gcc -c -g -O2 conftest.c >&5
configure:4583: $? = 0
configure:4583: result: yes
configure:4583: checking for inttypes.h
configure:4583: gcc -c -g -O2 conftest.c >&5
configure:4583: $? = 0
configure:4583: result: yes
configure:4583: checking for stdint.h
configure:4583: gcc -c -g -O2 conftest.c >&5
configure:4583: $? = 0
configure:4583: result: yes
configure:4583: checking for unistd.h
configure:4583: gcc -c -g -O2 conftest.c >&5
configure:4583: $? = 0
configure:4583: result: yes
configure:4596: checking minix/config.h usability
configure:4596: gcc -c -g -O2 conftest.c >&5
conftest.c:54:26: fatal error: minix/config.h: No such file or directory
#include <minix/config.h>
^
compilation terminated.
configure:4596: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "pt_module"
| #define PACKAGE_TARNAME "pt_module"
| #define PACKAGE_VERSION "1.0"
| #define PACKAGE_STRING "pt_module 1.0"
| #define PACKAGE_BUGREPORT "nest_user@nest-initiative.org"
| #define PACKAGE_URL ""
| #define PACKAGE "nest"
| #define VERSION ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <minix/config.h>
configure:4596: result: no
configure:4596: checking minix/config.h presence
configure:4596: gcc -E conftest.c
conftest.c:21:26: fatal error: minix/config.h: No such file or directory
#include <minix/config.h>
^
compilation terminated.
configure:4596: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "pt_module"
| #define PACKAGE_TARNAME "pt_module"
| #define PACKAGE_VERSION "1.0"
| #define PACKAGE_STRING "pt_module 1.0"
| #define PACKAGE_BUGREPORT "nest_user@nest-initiative.org"
| #define PACKAGE_URL ""
| #define PACKAGE "nest"
| #define VERSION ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h. */
| #include <minix/config.h>
configure:4596: result: no
configure:4596: checking for minix/config.h
configure:4596: result: no
configure:4617: checking whether it is safe to define __EXTENSIONS__
configure:4635: gcc -c -g -O2 conftest.c >&5
configure:4635: $? = 0
configure:4642: result: yes
configure:4718: checking for mpicxx
configure:4734: found /usr/bin/mpicxx
configure:4745: result: mpicxx
configure:4772: checking for C++ compiler version
configure:4781: mpicxx --version >&5
g++ (Ubuntu 4.8.2-19ubuntu1) 4.8.2
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:4792: $? = 0
configure:4781: mpicxx -v >&5
Using built-in specs.
COLLECT_GCC=/usr/bin/g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1)
configure:4792: $? = 0
configure:4781: mpicxx -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:4792: $? = 4
configure:4781: mpicxx -qversion >&5
g++: error: unrecognized command line option '-qversion'
g++: fatal error: no input files
compilation terminated.
configure:4792: $? = 4
configure:4796: checking whether we are using the GNU C++ compiler
configure:4815: mpicxx -c conftest.cpp >&5
configure:4815: $? = 0
configure:4824: result: yes
configure:4833: checking whether mpicxx accepts -g
configure:4853: mpicxx -c -g conftest.cpp >&5
configure:4853: $? = 0
configure:4894: result: yes
configure:4919: checking dependency style of mpicxx
configure:5030: result: gcc3
configure:5053: checking for a sed that does not truncate output
configure:5117: result: /bin/sed
configure:5135: checking for fgrep
configure:5197: result: /bin/grep -F
configure:5224: checking how to print strings
configure:5251: result: printf
configure:5284: checking for ld used by gcc
configure:5351: result: /usr/bin/ld
configure:5358: checking if the linker (/usr/bin/ld) is GNU ld
configure:5373: result: yes
configure:5451: checking for BSD- or MS-compatible name lister (nm)
configure:5500: result: /usr/bin/nm -B
configure:5630: checking the name lister (/usr/bin/nm -B) interface
configure:5637: gcc -c -g -O2 conftest.c >&5
configure:5640: /usr/bin/nm -B "conftest.o"
configure:5643: output
0000000000000000 B some_variable
configure:5650: result: BSD nm
configure:5653: checking whether ln -s works
configure:5657: result: yes
configure:5665: checking the maximum length of command line arguments
configure:5796: result: 1572864
configure:5813: checking whether the shell understands some XSI constructs
configure:5823: result: yes
configure:5827: checking whether the shell understands "+="
configure:5833: result: yes
configure:5868: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format
configure:5908: result: func_convert_file_noop
configure:5915: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format
configure:5935: result: func_convert_file_noop
configure:5942: checking for /usr/bin/ld option to reload object files
configure:5949: result: -r
configure:6023: checking for objdump
configure:6039: found /usr/bin/objdump
configure:6050: result: objdump
configure:6082: checking how to recognize dependent libraries
configure:6280: result: pass_all
configure:6365: checking for dlltool
configure:6395: result: no
configure:6425: checking how to associate runtime and link libraries
configure:6452: result: printf %s\n
configure:6512: checking for ar
configure:6528: found /usr/bin/ar
configure:6539: result: ar
configure:6576: checking for archiver @FILE support
configure:6593: gcc -c -g -O2 conftest.c >&5
configure:6593: $? = 0
configure:6596: ar cru libconftest.a @conftest.lst >&5
configure:6599: $? = 0
configure:6604: ar cru libconftest.a @conftest.lst >&5
ar: conftest.o: No such file or directory
configure:6607: $? = 1
configure:6619: result: @
configure:6677: checking for strip
configure:6693: found /usr/bin/strip
configure:6704: result: strip
configure:6776: checking for ranlib
configure:6792: found /usr/bin/ranlib
configure:6803: result: ranlib
configure:6905: checking command to parse /usr/bin/nm -B output from gcc object
configure:7025: gcc -c -g -O2 conftest.c >&5
configure:7028: $? = 0
configure:7032: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:7035: $? = 0
configure:7101: gcc -o conftest -g -O2 conftest.c conftstm.o >&5
configure:7104: $? = 0
configure:7142: result: ok
configure:7179: checking for sysroot
configure:7209: result: no
configure:7286: gcc -c -g -O2 conftest.c >&5
configure:7289: $? = 0
configure:7478: checking for mt
configure:7494: found /bin/mt
configure:7505: result: mt
configure:7528: checking if mt is a manifest tool
configure:7534: mt '-?'
configure:7542: result: no
configure:8181: checking for dlfcn.h
configure:8181: gcc -c -g -O2 conftest.c >&5
configure:8181: $? = 0
configure:8181: result: yes
configure:8398: checking for objdir
configure:8413: result: .libs
configure:8680: checking if gcc supports -fno-rtti -fno-exceptions
configure:8698: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]
configure:8702: $? = 0
configure:8715: result: no
configure:9042: checking for gcc option to produce PIC
configure:9049: result: -fPIC -DPIC
configure:9057: checking if gcc PIC flag -fPIC -DPIC works
configure:9075: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5
configure:9079: $? = 0
configure:9092: result: yes
configure:9121: checking if gcc static flag -static works
configure:9149: result: yes
configure:9164: checking if gcc supports -c -o file.o
configure:9185: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5
configure:9189: $? = 0
configure:9211: result: yes
configure:9219: checking if gcc supports -c -o file.o
configure:9266: result: yes
configure:9299: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:10456: result: yes
configure:10493: checking whether -lc should be explicitly linked in
configure:10501: gcc -c -g -O2 conftest.c >&5
configure:10504: $? = 0
configure:10519: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1
configure:10522: $? = 0
configure:10536: result: no
configure:10696: checking dynamic linker characteristics
configure:11196: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5
configure:11196: $? = 0
configure:11430: result: GNU/Linux ld.so
configure:11537: checking how to hardcode library paths into programs
configure:11562: result: immediate
configure:12102: checking whether stripping libraries is possible
configure:12107: result: yes
configure:12142: checking if libtool supports shared libraries
configure:12144: result: yes
configure:12147: checking whether to build shared libraries
configure:12168: result: yes
configure:12171: checking whether to build static libraries
configure:12175: result: yes
configure:12198: checking how to run the C++ preprocessor
configure:12225: mpicxx -E conftest.cpp
configure:12225: $? = 0
configure:12239: mpicxx -E conftest.cpp
conftest.cpp:28:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:12239: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "pt_module"
| #define PACKAGE_TARNAME "pt_module"
| #define PACKAGE_VERSION "1.0"
| #define PACKAGE_STRING "pt_module 1.0"
| #define PACKAGE_BUGREPORT "nest_user@nest-initiative.org"
| #define PACKAGE_URL ""
| #define PACKAGE "nest"
| #define VERSION ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define __EXTENSIONS__ 1
| #define _ALL_SOURCE 1
| #define _GNU_SOURCE 1
| #define _POSIX_PTHREAD_SEMANTICS 1
| #define _TANDEM_SOURCE 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12264: result: mpicxx -E
configure:12284: mpicxx -E conftest.cpp
configure:12284: $? = 0
configure:12298: mpicxx -E conftest.cpp
conftest.cpp:28:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:12298: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "pt_module"
| #define PACKAGE_TARNAME "pt_module"
| #define PACKAGE_VERSION "1.0"
| #define PACKAGE_STRING "pt_module 1.0"
| #define PACKAGE_BUGREPORT "nest_user@nest-initiative.org"
| #define PACKAGE_URL ""
| #define PACKAGE "nest"
| #define VERSION ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define __EXTENSIONS__ 1
| #define _ALL_SOURCE 1
| #define _GNU_SOURCE 1
| #define _POSIX_PTHREAD_SEMANTICS 1
| #define _TANDEM_SOURCE 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:12467: checking for ld used by mpicxx
configure:12534: result: /usr/bin/ld -m elf_x86_64
configure:12541: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld
configure:12556: result: yes
configure:12611: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:13613: result: yes
configure:13649: mpicxx -c conftest.cpp >&5
configure:13652: $? = 0
configure:14172: checking for mpicxx option to produce PIC
configure:14179: result: -fPIC -DPIC
configure:14187: checking if mpicxx PIC flag -fPIC -DPIC works
configure:14205: mpicxx -c -fPIC -DPIC -DPIC conftest.cpp >&5
configure:14209: $? = 0
configure:14222: result: yes
configure:14245: checking if mpicxx static flag -static works
configure:14273: result: no
configure:14285: checking if mpicxx supports -c -o file.o
configure:14306: mpicxx -c -o out/conftest2.o conftest.cpp >&5
configure:14310: $? = 0
configure:14332: result: yes
configure:14337: checking if mpicxx supports -c -o file.o
configure:14384: result: yes
configure:14414: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:14453: result: yes
configure:14594: checking dynamic linker characteristics
configure:15262: result: GNU/Linux ld.so
configure:15315: checking how to hardcode library paths into programs
configure:15340: result: immediate
configure:15420: checking how to run the C++ preprocessor
configure:15486: result: mpicxx -E
configure:15506: mpicxx -E conftest.cpp
configure:15506: $? = 0
configure:15520: mpicxx -E conftest.cpp
conftest.cpp:28:28: fatal error: ac_nonexistent.h: No such file or directory
#include <ac_nonexistent.h>
^
compilation terminated.
configure:15520: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "pt_module"
| #define PACKAGE_TARNAME "pt_module"
| #define PACKAGE_VERSION "1.0"
| #define PACKAGE_STRING "pt_module 1.0"
| #define PACKAGE_BUGREPORT "nest_user@nest-initiative.org"
| #define PACKAGE_URL ""
| #define PACKAGE "nest"
| #define VERSION ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define __EXTENSIONS__ 1
| #define _ALL_SOURCE 1
| #define _GNU_SOURCE 1
| #define _POSIX_PTHREAD_SEMANTICS 1
| #define _TANDEM_SOURCE 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:15553: checking for gmake
configure:15586: result: no
configure:15553: checking for make
configure:15571: found /usr/bin/make
configure:15583: result: /usr/bin/make
configure:15754: checking that generated files are newer than configure
configure:15760: result: done
configure:15787: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by pt_module config.status 1.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on ubuntu
config.status:1173: creating Makefile
config.status:1173: creating pt_module_config.h
config.status:1387: executing depfiles commands
config.status:1387: executing libtool commands
configure:18342: === configuring in libltdl (/home/fiebig/Desktop/BCPNN-Module/build-module-100725/libltdl)
configure:18405: running /bin/bash /home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/libltdl/configure --disable-option-checking '--prefix=/home/fiebig/Desktop/BCPNN-Module' '--with-nest=/home/fiebig/Programs/nest-2.4.2-build/bin/nest-config' '--enable-ltdl-convenience' --cache-file=/dev/null --srcdir=/home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/libltdl
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_file__home_fiebig_Programs_nest_2_4_2_build_bin_nest_config=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_minix_config_h=no
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_MAKE=/usr/bin/make
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=mawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='mpicxx -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=mpicxx
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_safe_to_define___extensions__=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/missing aclocal-1.14'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=''
AM_CXXFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
ARFLAGS=''
AS=''
AUTOCONF='${SHELL} /home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/missing autoconf'
AUTOHEADER='${SHELL} /home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/missing autoheader'
AUTOMAKE='${SHELL} /home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/missing automake-1.14'
AWK='mawk'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
CPP='gcc -E'
CPPFLAGS=''
CXX='mpicxx'
CXXCPP='mpicxx -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS=''
CXX_AR=''
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
HAVE_NEST='yes'
HELPDIRS='/home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725:/home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/sli'
HOST=''
INCLTDL='-I${top_srcdir}/libltdl'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
KERNEL=''
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS=''
LIBLTDL='${top_build_prefix}libltdl/libltdlc.la'
LIBOBJS=''
LIBS=''
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTDLDEPS='${top_build_prefix}libltdl/libltdlc.la'
LTDLINCL='-I${top_srcdir}/libltdl'
LTLIBOBJS=''
MAKE='/usr/bin/make'
MAKEINFO='${SHELL} /home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/missing makeinfo'
MAKE_FLAGS=''
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NEST_COMPILER='mpicxx'
NEST_CONFIG='/home/fiebig/Programs/nest-2.4.2-build/bin/nest-config'
NEST_CPPFLAGS='-I/home/fiebig/Programs/nest-2.4.2-build/libnestutil -I/home/fiebig/Downloads/nest-2.4.2/{libnestutil,librandom,sli,nestkernel,nest,topology} -fopenmp'
NEST_PREFIX='/home/fiebig/Programs/nest-2.4.2-build'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='nest'
PACKAGE_BUGREPORT='nest_user@nest-initiative.org'
PACKAGE_NAME='pt_module'
PACKAGE_STRING='pt_module 1.0'
PACKAGE_TARNAME='pt_module'
PACKAGE_URL=''
PACKAGE_VERSION='1.0'
PATH_SEPARATOR=':'
PKGBUILDDIR='/home/fiebig/Desktop/BCPNN-Module/build-module-100725'
PKGDATADIR='${datarootdir}/nest'
PKGDOCDIR='${datarootdir}/doc/nest'
PKGSRCDIR='/home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725'
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP='strip'
VERSION=''
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX='mpicxx'
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=' -I$(srcdir)'
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/fiebig/Desktop/BCPNN-Module/bootstrap-module-100725/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/fiebig/Desktop/BCPNN-Module'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' libltdl'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "pt_module"
#define PACKAGE_TARNAME "pt_module"
#define PACKAGE_VERSION "1.0"
#define PACKAGE_STRING "pt_module 1.0"
#define PACKAGE_BUGREPORT "nest_user@nest-initiative.org"
#define PACKAGE_URL ""
#define PACKAGE "nest"
#define VERSION ""
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define __EXTENSIONS__ 1
#define _ALL_SOURCE 1
#define _GNU_SOURCE 1
#define _POSIX_PTHREAD_SEMANTICS 1
#define _TANDEM_SOURCE 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
configure: exit 0
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by pt_module config.status 1.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status pt_module_config.h
on ubuntu
config.status:1173: creating pt_module_config.h
config.status:1339: pt_module_config.h is unchanged