// genesis // Arranging the P5IBb cells in space. //float P5IBb_SEPX = 25e-6 //float P5IBb_SEPY = 25e-6 //float P5IBb_NX = 5 //float P5IBb_NY = 5 float originxmin float originymin // Unique number for each cell type (same as spike number) int typenum = 7 int ydex float placer float randzpos int i,j int k = 0 placer = {mynode}/{sqrtNnodes} ydex = { round {placer} } originxmin = {regionoffsetx}+({mynode}-{ydex}*sqrtNnodes)*P5IBb_NX*P5IBb_SEPX originymin = {regionoffsety}+{ydex}*P5IBb_NY*P5IBb_SEPY create neutral /P5IBbnet // Random orientation float randrotation addfield /P5IBb rotation if ({{{output} == 1} & {{membranepotentialoutput} == 1}}) create asc_file /Vmwrite{typenum} setfield /Vmwrite{typenum} filename ./data-latest/membrane.celltype{typenum}.{myzeropadnode} flush 1 leave_open 1 append 0 float_format %0.9g end // CREATING THE PLANE OF P5IBb cells //createmap /P5IBb /P5IBbnet \ // {P5IBb_NX} {P5IBb_NY} \ // -delta {P5IBb_SEPX} {P5IBb_SEPY} \ // -origin {originxmin} {originymin} // Note that these cells' positions overlap. This doesn't cause any // problems since we can refer to them as separate groups. for (j = 0; j < P5IBb_NY; j = j+1) for (i = 0; i < P5IBb_NX; i = i+1) int newrandseed = {{ {typenum} @0@ {trunc {{{originxmin}+{P5IBb_SEPX}*{i}}/{SEPX}}} @0@ {trunc {{{originymin}+{P5IBb_SEPY}*{j}}/{SEPY}}} } + {myrandseed}} randseed {newrandseed} randzpos = { rand 550e-6 1262e-6 } copy /P5IBb /P5IBbnet/P5IBb[{k}] position /P5IBbnet/P5IBb[{k}] \ {originxmin + P5IBb_SEPX*i} {originymin + P5IBb_SEPY*j} {randzpos} // Rotate about z-axis ("twirl" in GENESIS cellsheet terminology) if ({rotateneurons} == 1) randrotation = {rand 0 6.283185308 } setfield /P5IBbnet/P5IBb[{k}] rotation {randrotation} // save for posterity rotcoord /P5IBbnet/P5IBb[{k}] {randrotation} -z -center {originxmin + P5IBb_SEPX*i} {originymin + P5IBb_SEPY*j} {randzpos} end if ({{{output} == 1} & {{membranepotentialoutput} == 1}}) addmsg /P5IBbnet/P5IBb[{k}]/soma /Vmwrite{typenum} SAVE Vm end k=k+1 end end