// genesis // Setting the axonal propagation velocity float CABLE_VEL = 1 // scale factor = 1/(cable velocity) sec/meter float destlim = {P23RSc_P23RSb_destlim} /* * Usage : * volumeconnect source-path destination-path * [-relative] * [-sourcemask {box,ellipse} x1 y1 x2 y2] * [-sourcehole {box,ellipse} x1 y1 x2 y2] * [-destmask {box,ellipse} x1 y1 x2 y2] * [-desthole {box,ellipse} x1 y1 x2 y2] * [-probability p] */ //P23RSc - P23RSb AMPA str s //Load synapse location array str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc" foreach s ({arglist {locations}}) barrierall //ayu rvolumeconnect /P23RScnet/P23RSc[]/soma/spk3 \ /P23RSbnet/P23RSb[]/{s}/Ex_ch2P23RSAMPA@{regionnodes} \ -relative \ -sourcemask box -1 -1 -1 1 1 1 \ -destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \ -desthole box -0.000001 -0.000001 -0.000001 0.000001 0.000001 0.000001 \ -probability {{shortrangeP23probscale}*{P23RSc_P23RSb_prob}} end //P23RSc - P23RSb NMDA str s //Load synapse location array str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc" foreach s ({arglist {locations}}) barrierall //ayu rvolumeconnect /P23RScnet/P23RSc[]/soma/spk3 \ /P23RSbnet/P23RSb[]/{s}/Ex_ch2P23RSNMDA@{regionnodes} \ -relative \ -sourcemask box -1 -1 -1 1 1 1 \ -destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \ -desthole box -0.000001 -0.000001 -0.000001 0.000001 0.000001 0.000001 \ -probability {{shortrangeP23probscale}*{P23RSc_P23RSb_prob}} end // assigning delays using the volumedelay function /* * Usage : * volumedelay path * [-fixed delay] * [-radial propagation_velocity] * [-uniform range] (not used here) * [-gaussian sd max] (not used here) * [-exp mid max] (not used here) * [-absoluterandom] (not used here) */ barrierall //ayu rvolumedelay /P23RScnet/P23RSc[]/soma/spk3 -radial {P23RSc_P23RSb_axdelayCV} -add //P23RSc - P23RSb AMPA str s //Load synapse location array str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc" foreach s ({arglist {locations}}) barrierall //ayu syndelay /P23RSbnet/P23RSb[]/{s}/Ex_ch2P23RSAMPA {P23RSc_P23RSb_syndelay} -add end //P23RSc - P23RSb NMDA str s //Load synapse location array str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc" foreach s ({arglist {locations}}) barrierall //ayu syndelay /P23RSbnet/P23RSb[]/{s}/Ex_ch2P23RSNMDA {P23RSc_P23RSb_syndelay} -add end // assigning weights using the volumeweight function /* * Usage : * volumeweight sourcepath * [-fixed weight] * [-decay decay_rate max_weight min_weight] * [-uniform range] * [-gaussian sd max] * [-exponential mid max] * [-absoluterandom] */ barrierall //ayu rvolumeweight /P23RScnet/P23RSc[]/soma/spk3 -decay {P23RSdecayrate} {P23RSmaxwgt} {P23RSminwgt}