// genesis // Setting the axonal propagation velocity float CABLE_VEL = 1 // scale factor = 1/(cable velocity) sec/meter //float destlim = {P23RSd_P23RSc_destlim} float destlim = 1.0 // being lazy; should calculate based on model size instead /* * Usage : * volumeconnect source-path destination-path * [-relative] * [-sourcemask {box,ellipse} x1 y1 x2 y2] * [-sourcehole {box,ellipse} x1 y1 x2 y2] * [-destmask {box,ellipse} x1 y1 x2 y2] * [-desthole {box,ellipse} x1 y1 x2 y2] * [-probability p] */ //P23RSd - P23RSc AMPA str s //Load synapse location array str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc" foreach s ({arglist {locations}}) barrierall //ayu rvolumeconnect /P23RSdnet/P23RSd[]/soma/spk4longrange \ /P23RScnet/P23RSc[]/{s}/Ex_ch3P23RSAMPA@{distantnodes} \ -relative \ -sourcemask box -1 -1 -1 1 1 1 \ -destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \ -desthole box -0.000001 -0.000001 -0.000001 0.000001 0.000001 0.000001 \ -probability {{longrangeprobscale}*{P23RSd_P23RSc_prob}} //-probability 0.5 end //P23RSd - P23RSc NMDA str s //Load synapse location array str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc" foreach s ({arglist {locations}}) barrierall //ayu rvolumeconnect /P23RSdnet/P23RSd[]/soma/spk4longrange \ /P23RScnet/P23RSc[]/{s}/Ex_ch3P23RSNMDA@{distantnodes} \ -relative \ -sourcemask box -1 -1 -1 1 1 1 \ -destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \ -desthole box -0.000001 -0.000001 -0.000001 0.000001 0.000001 0.000001 \ -probability {{longrangeprobscale}*{P23RSd_P23RSc_prob}} end // For inhibitory long range connections ////P23RSd - P23RSc GABAa //str s ////Load synapse location array //str locations = "apobproxLa apobproxLb apobproxLc apobdistLa apobdistLb apobdistLc apobproxRa apobproxRb apobproxRc apobdistRa apobdistRb apobdistRc basalLsupera basalLsuperb basalLsuperc basalLmidsupera basalLmidsuperb basalLmidsuperc basalLmiddeepa basalLmiddeepb basalLmiddeepc basalLdeepa basalLdeepb basalLdeepc basalRsupera basalRsuperb basalRsuperc basalRmidsupera basalRmidsuperb basalRmidsuperc basalRmiddeepa basalRmiddeepb basalRmiddeepc basalRdeepa basalRdeepb basalRdeepc" // //foreach s ({arglist {locations}}) // // barrierall //ayu // rvolumeconnect /P23RSdnet/P23RSd[]/soma/spk4longrange \ // /P23RScnet/P23RSc[]/{s}/Inh_ch3P23RSGABAa@{distantnodes} \ // -relative \ // -sourcemask box -1 -1 -1 1 1 1 \ // -destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \ // -desthole box -0.000001 -0.000001 -0.000001 0.000001 0.000001 0.000001 \ // -probability {{longrangeprobscale}*{P23RSd_P23RSc_prob}} // //end // assigning delays barrierall //ayu rvolumedelay /P23RSdnet/P23RSd[]/soma/spk4longrange -radial {{P23RSd_P23RSc_axdelayCV}*{longrangeCVscale}} -add // assigning weights float P23RSdmaxweight = 1.0 float P23RSdminweight = 0.0 float P23RSddecayrate = 0.1 float longrangeweight = {longrangeweightscale}*{{{P23RSdmaxweight}-{P23RSdminweight}} * {exp {-1*{sqrt {{NX}^2*{SEPX}^2*{sqrtNnodesperregion}+{NY}^2*{SEPY}^2*{sqrtNnodesperregion}} }*P23RSddecayrate} } + {P23RSdminweight}} barrierall //ayu rvolumeweight /P23RSdnet/P23RSd[]/soma/spk4longrange -fixed {longrangeweight}