// genesis

// Setting the axonal propagation velocity
float CABLE_VEL = 1	// scale factor = 1/(cable velocity) sec/meter

float destlim = {P5IBa_P5RSa_destlim}

/*
 * Usage :
 * planarconnect source-path destination-path
 *		 [-relative]
 *		 [-sourcemask {box,ellipse} x1 y1 x2 y2]
 *		 [-sourcehole {box,ellipse} x1 y1 x2 y2]
 *		 [-destmask   {box,ellipse} x1 y1 x2 y2]
 *		 [-desthole   {box,ellipse} x1 y1 x2 y2]
 *		 [-probability p]
 */



//P5IBa - P5RSa AMPA

str s

//Load synapse location array

str locations = "apdend1 apdend2 apdend3 apdend4 apdend5 apdend6 apdend7 apdend8 apdend9 apdend10 apdend11 apdend12 apdend13 apobdistLa apobdistLb apobdistLc apobmidLa apobmidLb apobmidLc apobproxLa apobproxLb apobproxLc apobdistRa apobdistRb apobdistRc apobmidRa apobmidRb apobmidRc apobproxRa apobproxRb apobproxRc basalLsupera basalLsuperb basalLsuperc basalLmida basalLmidb basalLmidc basalRsupera basalRsuperb basalRsuperc basalRmida basalRmidb basalRmidc basaldeepa basaldeepb basaldeepc"

foreach s ({arglist {locations}})

    barrierall //ayu
    rvolumeconnect /P5IBanet/P5IBa[]/soma/spk6  \
	      /P5RSanet/P5RSa[]/{s}/Ex_ch23P5IBAMPA@{regionnodes}    \
	      -relative			    \
	      -sourcemask box -1 -1  -1  1  1  1  \
	      -destmask   box -{destlim} -{destlim}  -1 {destlim}  {destlim}  1   \
	      -desthole   box -0.000001 -0.000001 -0.000001 0.000001 0.000001 0.000001 \
          -probability {{shortrangeprobscale}*{P5IBa_P5RSa_prob}}

end

//P5IBa - P5RSa NMDA

str s

//Load synapse location array

str locations = "apdend1 apdend2 apdend3 apdend4 apdend5 apdend6 apdend7 apdend8 apdend9 apdend10 apdend11 apdend12 apdend13 apobdistLa apobdistLb apobdistLc apobmidLa apobmidLb apobmidLc apobproxLa apobproxLb apobproxLc apobdistRa apobdistRb apobdistRc apobmidRa apobmidRb apobmidRc apobproxRa apobproxRb apobproxRc basalLsupera basalLsuperb basalLsuperc basalLmida basalLmidb basalLmidc basalRsupera basalRsuperb basalRsuperc basalRmida basalRmidb basalRmidc basaldeepa basaldeepb basaldeepc"

foreach s ({arglist {locations}})

    barrierall //ayu
    rvolumeconnect /P5IBanet/P5IBa[]/soma/spk6  \
	      /P5RSanet/P5RSa[]/{s}/Ex_ch23P5IBNMDA@{regionnodes}	    \
	      -relative			    \
	      -sourcemask box -1 -1  -1  1  1  1  \
	      -destmask   box -{destlim} -{destlim}  -1 {destlim}  {destlim}  1   \
	      -desthole   box -0.000001 -0.000001 -0.000001 0.000001 0.000001 0.000001 \
          -probability {{shortrangeprobscale}*{P5IBa_P5RSa_prob}}

end


// assigning delays using the planardelay function

/* 
 * Usage :
 * planardelay path 
 * [-fixed delay]
 * [-radial propagation_velocity] 
 * [-uniform range]   (not used here)
 * [-gaussian sd max] (not used here)
 * [-exp mid max]     (not used here)
 * [-absoluterandom]  (not used here)
 */

barrierall //ayu
rvolumedelay /P5IBanet/P5IBa[]/soma/spk6 -radial  {P5IBa_P5RSa_axdelayCV} -add

//P5IBa - P5RSa AMPA

str s

//Load synapse location array

str locations = "apdend1 apdend2 apdend3 apdend4 apdend5 apdend6 apdend7 apdend8 apdend9 apdend10 apdend11 apdend12 apdend13 apobdistLa apobdistLb apobdistLc apobmidLa apobmidLb apobmidLc apobproxLa apobproxLb apobproxLc apobdistRa apobdistRb apobdistRc apobmidRa apobmidRb apobmidRc apobproxRa apobproxRb apobproxRc basalLsupera basalLsuperb basalLsuperc basalLmida basalLmidb basalLmidc basalRsupera basalRsuperb basalRsuperc basalRmida basalRmidb basalRmidc basaldeepa basaldeepb basaldeepc"

foreach s ({arglist {locations}})

    barrierall //ayu
    syndelay    /P5RSanet/P5RSa[]/{s}/Ex_ch23P5IBAMPA {P5IBa_P5RSa_syndelay} -add

end

//P5IBa - P5RSa NMDA

str s

//Load synapse location array

str locations = "apdend1 apdend2 apdend3 apdend4 apdend5 apdend6 apdend7 apdend8 apdend9 apdend10 apdend11 apdend12 apdend13 apobdistLa apobdistLb apobdistLc apobmidLa apobmidLb apobmidLc apobproxLa apobproxLb apobproxLc apobdistRa apobdistRb apobdistRc apobmidRa apobmidRb apobmidRc apobproxRa apobproxRb apobproxRc basalLsupera basalLsuperb basalLsuperc basalLmida basalLmidb basalLmidc basalRsupera basalRsuperb basalRsuperc basalRmida basalRmidb basalRmidc basaldeepa basaldeepb basaldeepc"

foreach s ({arglist {locations}})

    barrierall //ayu
    syndelay    /P5RSanet/P5RSa[]/{s}/Ex_ch23P5IBNMDA {P5IBa_P5RSa_syndelay} -add

end

// assigning weights using the planarweight function

/* 
 * Usage :
 *  planarweight sourcepath 
 *          [-fixed weight]
 *          [-decay decay_rate max_weight min_weight]
 *          [-uniform range] 
 *          [-gaussian sd max] 
 *          [-exponential mid max]
 *          [-absoluterandom]
 */

barrierall //ayu
rvolumeweight /P5IBanet/P5IBa[]/soma/spk6 -decay {P5IBdecayrate} {P5IBmaxwgt} {P5IBminwgt}