// genesis // Setting the axonal propagation velocity float CABLE_VEL = 1 // scale factor = 1/(cable velocity) sec/meter float destlim = {P5IBc_I5LTS_destlim} /* * Usage : * volumeconnect source-path destination-path * [-relative] * [-sourcemask {box,ellipse} x1 y1 x2 y2] * [-sourcehole {box,ellipse} x1 y1 x2 y2] * [-destmask {box,ellipse} x1 y1 x2 y2] * [-desthole {box,ellipse} x1 y1 x2 y2] * [-probability p] */ //P5IBc - I5LTS AMPA str s //Load synapse location array str locations = "distdendNlongb distdendNlongc distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWmidb distdendWmidc distdendWshorta distdendWshortb" foreach s ({arglist {locations}}) barrierall //ayu rvolumeconnect /P5IBcnet/P5IBc[]/soma/spk8 \ /I5LTSnet/I5LTS[]/{s}/Ex_ch19P5IBAMPA@{regionnodes} \ -relative \ -sourcemask box -1 -1 -1 1 1 1 \ -destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \ -desthole box -0.000001 -0.000001 -0.000001 0.000001 0.000001 0.000001 \ -probability {{shortrangeprobscale}*{P5IBc_I5LTS_prob}} end //P5IBc - I5LTS NMDA str s //Load synapse location array str locations = "distdendNlongb distdendNlongc distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWmidb distdendWmidc distdendWshorta distdendWshortb" foreach s ({arglist {locations}}) barrierall //ayu rvolumeconnect /P5IBcnet/P5IBc[]/soma/spk8 \ /I5LTSnet/I5LTS[]/{s}/Ex_ch19P5IBNMDA@{regionnodes} \ -relative \ -sourcemask box -1 -1 -1 1 1 1 \ -destmask box -{destlim} -{destlim} -1 {destlim} {destlim} 1 \ -desthole box -0.000001 -0.000001 -0.000001 0.000001 0.000001 0.000001 \ -probability {{shortrangeprobscale}*{P5IBc_I5LTS_prob}} end // assigning delays using the volumedelay function /* * Usage : * volumedelay path * [-fixed delay] * [-radial propagation_velocity] * [-uniform range] (not used here) * [-gaussian sd max] (not used here) * [-exp mid max] (not used here) * [-absoluterandom] (not used here) */ barrierall //ayu rvolumedelay /P5IBcnet/P5IBc[]/soma/spk8 -radial {P5IBc_I5LTS_axdelayCV} -add // P5IBc - I5LTS AMPA str s //Load synapse location array str locations = "distdendNlongb distdendNlongc distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWmidb distdendWmidc distdendWshorta distdendWshortb" foreach s ({arglist {locations}}) barrierall //ayu syndelay /I5LTSnet/I5LTS[]/{s}/Ex_ch19P5IBAMPA {P5IBc_I5LTS_syndelay} -add end // P5IBc - I5LTS NMDA str s //Load synapse location array str locations = "distdendNlongb distdendNlongc distdendNmidb distdendNmidc distdendNshorta distdendNshortb distdendElongb distdendElongc distdendEmidb distdendEmidc distdendEshorta distdendEshortb distdendSlongb distdendSlongc distdendSmidb distdendSmidc distdendSshorta distdendSshortb distdendWlongb distdendWlongc distdendWmidb distdendWmidc distdendWshorta distdendWshortb" foreach s ({arglist {locations}}) barrierall //ayu syndelay /I5LTSnet/I5LTS[]/{s}/Ex_ch19P5IBNMDA {P5IBc_I5LTS_syndelay} -add end // assigning weights using the volumeweight function /* * Usage : * volumeweight sourcepath * [-fixed weight] * [-decay decay_rate max_weight min_weight] * [-uniform range] * [-gaussian sd max] * [-exponential mid max] * [-absoluterandom] */ barrierall //ayu rvolumeweight /P5IBcnet/P5IBc[]/soma/spk8 -decay {P5IBdecayrate} {P5IBmaxwgt} {P5IBminwgt} //volumeweight /P5IBanet/P5IBa[]/soma/spk6 -fixed 0.50