load_file("nltemplate.hoc")
objref prim_nl, sec1_nl, sec2_nl, axon_nl, tuft_nl
prim_nl = new NLsection(1)
axon_nl = new NLsection(2)
sec2_nl = new NLsection(3)
sec1_nl = new NLsection(4)
tuft_nl = new NLsection(5)
create soma_sc
soma_sc {
nseg=3
connect sec1_nl.sect[0](0),1
connect sec2_nl.sect[0](0),0.5
connect axon_nl.sect[0](0),0
pt3dclear()
pt3dadd(axon_nl.xroot,axon_nl.yroot,axon_nl.zroot,axon_nl.droot)
pt3dadd((sec1_nl.xroot+axon_nl.xroot)/2,(sec1_nl.yroot+axon_nl.yroot)/2,(sec1_nl.zroot+axon_nl.zroot)/2,16.2)
pt3dadd(sec1_nl.xroot,sec1_nl.yroot,sec1_nl.zroot,sec1_nl.droot)
}
sec1_nl.sect[0] {
connect prim_nl.sect[0](0),1
}
prim_nl.sect[19] {
connect tuft_nl.sect[0](0),1
}
objref primary_dendrite,secondary_dendrite,tuft,mitral_cell,soma,initial_segment,axon_node,axon_myelin
soma = new SectionList() //soma+hillock
soma_sc soma.append()
axon_nl.sect[0] soma.append()
sec1_nl.sect[0] soma.append()
initial_segment = new SectionList() //initial segment
axon_nl.sect[1] initial_segment.append()
primary_dendrite = new SectionList() //primary dendrite
for i=0,prim_nl.nsect-1 {
prim_nl.sect[i] primary_dendrite.append()
}
axon_node = new SectionList() //axon_nl nodes
axon_myelin = new SectionList() //axon_nl myelinelin segments
for i=0,4 {
axon_nl.sect[2*i+2] axon_myelin.append()
axon_nl.sect[2*i+3] axon_node.append()
}
secondary_dendrite = new SectionList()
sec2_nl.sect[0] secondary_dendrite.append()
sec2_nl.sect[1] secondary_dendrite.append()
tuft = new SectionList()
for i=0,tuft_nl.nsect-1 {
tuft_nl.sect[i] tuft.append()
}
mitral_cell = new SectionList()
forsec axon_myelin mitral_cell.append()
forsec axon_node mitral_cell.append()
forsec initial_segment mitral_cell.append()
forsec soma mitral_cell.append()
forsec primary_dendrite mitral_cell.append()
forsec secondary_dendrite mitral_cell.append()
forsec tuft mitral_cell.append()