//addoutput.g
// function for saving parameter in ascii file.
//function is made and called in this file
//make function
function sav_disk_asc(diskpath,srcpath,field)
create asc_file /output/{diskpath}
setfield /output/{diskpath} flush 1 leave_open 1 append 1 \
float_format %0.6g
useclock /output/{diskpath} 0
setfield /output/{diskpath} filename output/{diskpath}
addmsg {srcpath} /output/{diskpath} SAVE {field}
call /output/{diskpath} OUT_OPEN
call /output/{diskpath} OUT_WRITE "time #1" //header
echo {diskpath}
end
//call function
/*******************save soma information****************************************************
sav_disk_asc somaVm{subunit}{stimtype} {cellpath}/soma Vm
*******************************************************************************************/
/*******************save secondary dendrite parameters**************************************
//sav_disk_asc dendCa{subunit}{stimtype} {cellpath}/secdend3/{CalciumBuffer_3} Ca
sav_disk_asc NMDACa{subunit}{stimtype} {cellpath}/secdend3/spine_1/head/buffer_NMDA Ca
//sav_disk_asc spineCa{subunit}{stimtype} {cellpath}/secdend3/spine_1/head/SpineCa Ca
//sav_disk_asc LspineCa{subunit}{stimtype} {cellpath}/secdend3/spine_1/head/SpineCaL Ca
//sav_disk_asc Ikblock{subunit}{stimtype} {cellpath}/secdend3/spine_1/head/{subunit}/block Ik
//sav_disk_asc spineVm{subunit}{stimtype} {cellpath}/secdend3/spine_1/head Vm
*******************************************************************************************/
/******************save tertiary dendrite information****************************************
sav_disk_asc dendCa{subunit}{stimtype}3 {cellpath}/tertdend3/{CalciumBuffer_3} Ca
sav_disk_asc spineCa{subunit}{stimtype}3 {cellpath}/tertdend3/tert_dend5/spine_1/head/buffer_NMDA
sav_disk_asc Ikblock{subunit}{stimtype}3 {cellpath}/tertdend3/tert_dend5/spine_1/head/{subunit}/block Ik Ca
sav_disk_asc spineVm{subunit}{stimtype}3 {cellpath}/tertdend3/tert_dend5/spine_1/head Vm
sav_disk_asc IkAMPA{stitype}3 {cellpath}/tertdend3/tert_dend5/spine_1/head/AMPA Ik
sav_disk_asc IkAMPA{stitype}2 {cellpath}/tertdend3/tert_dend5/spine_1/head/AMPA Ik
*********************************************************************************************/
// this function allows you to put several columns in the same file and name them using the call function series below it.
function add_output_sec
create asc_file /output/plot_out
setfield /output/plot_out flush 1 leave_open 1 append 1 \
float_format %0.6g
useclock /output/plot_out 1
//addmsg {cellpath}/secdend3/{CA_BUFF_3} /output/plot_out SAVE Ca //not hooked up?
addmsg {cellpath}/secdend3/spine_1/head/buffer_NMDA /output/plot_out SAVE Ca
//addmsg {cellpath}/secdend3/tert_dend5/spine_1/head/{subunit}/block /output/plot_out SAVE Ik
//addmsg {cellpath}/secdend3/spine_1/head/spineCaL /output/plot_out SAVE Ca
//addmsg {cellpath}/secdend3/spine_1/head/spineCa /output/plot_out SAVE Ca
//addmsg {cellpath}/secdend3/spine_1/head /output/plot_out SAVE Vm
addmsg {cellpath}/soma /output/plot_out SAVE Vm
call /output/plot_out OUT_OPEN
call /output/plot_out OUT_WRITE "time CaNMDA SomaVm" //header
end
function add_output_tert
create asc_file /output/plot_out
setfield /output/plot_out flush 1 leave_open 1 append 1 \
float_format %0.6g
useclock /output/plot_out 1
//addmsg {cellpath}/tertdend3/tert_dend3/{CA_BUFF_3} /output/plot_out SAVE Ca //not hooked up?
addmsg {cellpath}/tertdend3/tert_dend3/spine_1/head/buffer_NMDA /output/plot_out SAVE Ca
//addmsg {cellpath}/tertdend3/tert_dend3/tert_dend5/spine_1/head/{subunit}/block /output/plot_out SAVE Ik
//addmsg {cellpath}/tertdend3/tert_dend3/spine_1/head/spineCaL /output/plot_out SAVE Ca
//addmsg {cellpath}/tertdend3/tert_dend3/spine_1/head/spineCa /output/plot_out SAVE Ca
//addmsg {cellpath}/tertdend3/tert_dend3/spine_1/head /output/plot_out SAVE Vm
addmsg {cellpath}/soma /output/plot_out SAVE Vm
call /output/plot_out OUT_OPEN
call /output/plot_out OUT_WRITE "time CaNMDA SomaVm" //header
end
//add_output is for whatever and can be easily changed
function add_output
create asc_file /output/plot_out
setfield /output/plot_out flush 1 leave_open 1 append 1 \
float_format %0.6g
useclock /output/plot_out 1
addmsg /cell/soma /output/plot_out SAVE Vm
addmsg /cell/secdend11 /output/plot_out SAVE Vm
//addmsg /cell/soma/volavg /output/plot_out SAVE meanValue
//addmsg /cell/primdend1/volavg /output/plot_out SAVE meanValue
addmsg /cell/secdend11/volavg /output/plot_out SAVE meanValue
//addmsg /cell/tertdend1_1/volavg /output/plot_out SAVE meanValue
//addmsg /cell/tertdend1_1/Fluo5FVavg /output/plot_out SAVE meanValue
//addmsg /cell/tertdend1_1/Ca_difshell_1 /output/plot_out SAVE C
addmsg /cell/secdend11/NR2A/block /output/plot_out SAVE Gk
//addmsg /cell/secdend11/NR2A/GHK /output/plot_out SAVE Gk
addmsg /cell/secdend11/AMPA /output/plot_out SAVE Gk
//addmsg /cell/soma/fluorescence /output/plot_out SAVE ratio
//addmsg /cell/primdend1/fluorescence /output/plot_out SAVE ratio
addmsg /cell/secdend11/fluorescence /output/plot_out SAVE ratio
//addmsg /cell/tertdend1_1/fluorescence /output/plot_out SAVE ratio
//addmsg /cell/tertdend1_2/fluorescence /output/plot_out SAVE ratio
call /output/plot_out OUT_OPEN
call /output/plot_out OUT_WRITE "time SomaVm" //header
end
/*this part goes in a sim file and calls the add_ouput file above.
str diskpath
add_output_sec
// open file for 1AP, then run sim
stimtype="1APnegsec"
diskpath=(subunit)@(stimtype)@".txt"
echo {diskpath}
setfield /output/plot_out filename output/{diskpath}
call /output/plot_out OUT_OPEN
call /output/plot_out OUT_WRITE "time -20"
reset
include 1APnegsec.g
*/