## To generate Figure 2 in Cirtala2024 please follow the following steps: 1. Run NEURON code: a. Open a terminal at the folder `/Neuron_codes/CAP_17` b. Load the mod files by typing: nrnivmodl mod c. Run NEURON code: nrngui Branch3.hoc What you will obtain from NEURON: - In the NEURON window you will see a shape plot corresponding to how dendritic spikes propagate (Figures 2G-I after activation time t = 398msec). - In the Results folder you will see a lot of `.dat` files. The simulation automatically runs all PF in [2:2:150] for the CAP17. 2. Plot the Results a. In the Results folder find the Matlab code `Plot_Figure2DtoF.m`, please run it and you will obtain Figure2D-F. b. If you wish to obtain the comparative plots shown in Figure 2B and C please: - run the neuron codes corresponding to each CaP = {1,1.3,1.5,1.7} - for each case run `Plot_Figure2DtoF.m`, which will generate you a `.mat` file - Download each of this files and place them in the Matlab_codes - Run `Plot_Fig3panelsBC.m` If you have problems or you wish to test more scenarios, please email me at gabriela-cirtala@oist.jp