## To generate Figure 3 in Cirtala2024 please follow the following steps: 1. Run NEURON code: a. Open a terminal at the folder `/Neuron_codes/CAP_08` b. Load the mod files by typing: nrnivmodl mod c. Run NEURON code: nrngui Branch15.hoc What you will obtain from NEURON: - In the NEURON window you will see a shape plot corresponding to how dendritic spikes propagate (Figures 3G-I after activation time t = 399msec). - In the Results folder you will see a lot of `.dat` files. The simulation automatically runs all PF in [2:2:150] for the CAP08. 2. Plot the Results a. In the Results folder find the Matlab code `Plot_Figure3DtoF.m`, please run it and you will obtain Figure3D-F. b. If you wish to obtain the comparative plots shown in Figure 3B and C please: - run the neuron codes corresponding to each CaP = {0.6,0.8,1} - for each case run `Plot_Figure3DtoF.m`, which will generate you a `.mat` file - Download each of this files and place them in the Matlab_codes - Run `Plot_Fig3panelsBC.m` Observation: For obtaining FigureS1 please run the NEURON codes corresponding to 1.0 CaP and use `Plot_Figure3DtoF.m` to get FigureS1: panels A-C. If you have problems or you wish to test more scenarios, please email me at gabriela-cirtala@oist.jp