## To generate Figure 5 in Cirtala2024 please follow the following steps: 1. Run NEURON code: For each branch in the Purkinje Cell please follow the steps: a. Open a terminal at the desired branch: for example: `Figure5/Neuron_codes/left_tree/br1_CAP14` b. Load the mod files by typing: nrnivmodl mod c. Run NEURON code (corresponding to the branch you chose) nrngui Branch1.hoc What you will obtain from NEURON: - In the NEURON window you will see a shape plot corresponding to how dendritic spikes propagate - In the Results folder you will see a lot of `.dat` files. The simulation automatically runs all PF in [2:2:150] 2. Plot the Results a. In the Results folder find the Matlab code `Plot_br1.m`, please run it and you will obtain `br1_CAP14.mat`. Move this file to `Figure5/Matlab_codes` To obtain the comparative plots in Figure 5, you need to repeat steps 1-2 for each branch of the dendritic tree and then run `Figure5_code.m` located inside `Figure5/Matlab codes`. If you have problems or you wish to test more scenarios, please email me at gabriela-cirtala@oist.jp