This is the readme for the model for the paper: Hines ML, Carnevale NT. Translating network models to parallel hardware in NEURON. J Neurosci Methods. 2008 Apr 30;169(2):425-55. ===== USAGE ===== You may either autolaunch from your browser, or download the zip file and run the simulations manually. 1. Autolaunching from ModelDB ------------------------------ A "Launch" panel will appear that offers four buttons labeled Ring (Serial) Ring (Parallel) Random (Serial) Random (Parallel) Click on one of these to run a simulation. Results will be printed in the terminal window. At the end of a run, you may run another simulation, or exit. 2. Download zip file --------------------- Expand the zip file in an empty directory. The ring and random network files are in HinesCarnevaleJNM2007/ring and HinesCarnevaleJNM2007/random respectively. Before running the random network simulations, you must first compile the mod files in HinesCarnevaleJNM2007/random with mknrndll (MSWin, OS X) or nrnivmodl (UNIX/Linux). If you're not sure how, see http://www.neuron.yale.edu/neuron/docs/faq.html#compilemod To run a simulation manually: UNIX/Linux-- cd into the ring or random subdirectory At the system prompt, type nrngui filename where filename is one of the following: ringser.hoc ringpar.hoc ran3ser.hoc ran3par.hoc MSWin-- Double click on ringser.hoc, ringpar.hoc, ran3ser.hoc, or ran3par.hoc If the simulation finishes and exits too quickly, open the hoc file with a plain text editor and change the last statement from quit() to // quit() Save the hoc file and try again. It will now be necessary to type ^D (control-D) or quit() at the oc> prompt to exit NEURON. OS X-- Double click on ringser.hoc, ringpar.hoc, ran3ser.hoc, or ran3par.hoc or drag and drop the hoc file on the nrngui icon in the NEURON application folder. If the simulation finishes and exits too quickly, edit the hoc file as suggested for MSWin.