//====================//
// parameter setting //
//====================//
//======================//
// simulation parameter //
//======================//
ENABLE_GRAPHICAL_INTERFACE = 1
tstop = 5000 // (ms) total simulation time
step_dt = 0.0625 // (ms) simulation step original = 0.005
//number_steps = steps_per_ms*tstop
//======================//
// input parameters //
//======================//
//======================//
// models
// WT:
// input2RBC = 1
// input2ONCBC = 1
// input2OFFCBC = 1
// g_RB_AII = 0.0012
// v_th_ONCB_ONGC = -20
// v_th_OFFCB_OFFGC = -40
//
// Trpm1 KO:
// input2RBC = 0
// input2ONCBC = 0
// input2OFFCBC = 1
// g_RB_AII = 0.0
// v_th_ONCB_ONGC = -40
// v_th_OFFCB_OFFGC = -40
//
// mGluR6 KO:
// input2RBC = 3
// input2ONCBC = 3
// input2OFFCBF = 1
// g_RB_AII = 0.0012
// v_th_ONCB_ONGC = -30
// v_th_OFFCB_OFFGC = -40
// I2RBC = 0.5
// I2ONCBC = 1.4
//
// rd1:
// input2RBC = 0
// input2ONCBC = 0
// input2OFFCBF = 0
// g_RB_AII = 0.0
// v_th_ONCB_ONGC = -40
// v_th_OFFCB_OFFGC = -60
//======================//
input2RBC = 1
input2ONCBC = 1
input2OFFCBC = 1
g_RB_AII = 0.0012
v_th_ONCB_ONGC = -20
v_th_OFFCB_OFFGC = -40
I2RBC = 0.0
I2ONCBC = 0.0
gj_AC_ONCB = 0.00050
gj_AC_AC = 0.00008
gj_OFFGC_OFFGC = 0.001
gj_ONCB_ONCB = 0.001
gj_OFFCB_OFFCB = 0.001
g_ONCB_ONGC = 0.013
g_OFFCB_OFFGC = 0.013
g_OFFCB_AII = 0.0
g_AC_OFFGC = 0.003
g_AC_OFFCB = 0.0001
state = 0
proc states() {
if (state == 0){ //WT
input2RBC = 1
input2ONCBC = 1
input2OFFCBC = 1
g_RB_AII = 0.0012
v_th_ONCB_ONGC = -20
v_th_OFFCB_OFFGC = -40
I2RBC = 0.0
I2ONCBC = 0.0
}
if(state == 1){ //Trpm1KO
input2RBC = 3
input2ONCBC = 3
input2OFFCBC = 1
g_RB_AII = 0.0
v_th_ONCB_ONGC = -40
v_th_OFFCB_OFFGC = -40
I2RBC = -10.0
I2ONCBC = 0.0
}
if(state == 2){ //mGluR6KO
input2RBC = 3
input2ONCBC = 3
input2OFFCBC = 1
g_RB_AII = 0.0012
v_th_ONCB_ONGC = -30
v_th_OFFCB_OFFGC = -40
I2RBC = -10.0
I2ONCBC = 0.0
}
if(state == 3) {//rd1
input2RBC = 0
input2ONCBC = 0
input2OFFCBC = 0
g_RB_AII = 0.0
v_th_ONCB_ONGC = -40
v_th_OFFCB_OFFGC = -60
I2RBC = -10.0 //0.0
I2ONCBC = 0.0
}
Ribbon_syn_set()
iclamps()
}
//=========================================//
// cell parameter //
//-----------------------------------------//
// cell type //
// AIIAC //
// Rod Bipolar //
// ON Cone Bipolar //
// OFF Cone Bipolar //
// ON Ganglion //
// OFF Ganglion //
//=========================================//
//=================//
// AIIAC parameter //
//=================//
Num_AC = 14
noise_mean_AC = 0.0
noise_std_AC = 0.002
//=======================//
// Rod bipolar parameter //
//=======================//
Num_RBC = 126 //173(paper), or 20
noise_mean_RBC = 0.0
noise_std_RBC = 0.0004
//===================//
// ON Cone parameter //
//===================//
//Num_ONCBC = 55
Num_ONCBC = 28 //28(paper)
noise_mean_ONCBC = 0.0
noise_std_ONCBC = 0.0004
//====================//
// OFF Cone parameter //
//====================//
Num_OFFCBC = 64
noise_mean_OFFCBC = 0.0
noise_std_OFFCBC = 0.0004
//=================//
// ON GC parameter //
//=================//
Num_ONGC = 1
noise_mean_ONGC = 0.004
noise_std_ONGC = 0.005
//==================//
// OFF GC parameter //
//==================//
Num_OFFGC = 5
noise_mean_OFFGC = 0.003
noise_std_OFFGC = 0.005
//===========================================//
// connection parameter //
//-------------------------------------------//
// Gap junction //
// AIIAC <-> ONCB //
// AIIAC <-> AIIAC //
// OFFGC <-> OFFGC //
//-------------------------------------------//
// Glu syn (Ex) //
// Rod -> AIIAC //
// ONCB -> ONGC //
// OFFCB -> OFFGC //
// OFFCB -> AIIAC //
//-------------------------------------------//
// Gly syn (Inh) //
// AIIAC -> OFFGC //
// AIIAC -> OFFCB //
//===========================================//
//=================//
// Gap junction //
//=================//
// AIIAC <-> ONCB
//gj_AC_ONCB = 0.00050 //original
//gj_AC_ONCB = 0.00003 //[uS] //albino rat(normal)
// AIIAC <-> AIIAC
//gj_AC_AC = 0.00008 //[uS]
// OFFGC <-> OFFGC
//gj_OFFGC_OFFGC = 0.001 //[uS]
// ONCB <-> ONCB
//gj_ONCB_ONCB = 0.001 //[uS]
// OFFCB <-> OFFCB
//gj_OFFCB_OFFCB = 0.001 //[uS]
//==============//
// Glu syn(Ex) //
//==============//
// Rod -> AIIAC
//g_RB_AII = 0.0012 //normal
// g_RB_AII = 0.0000 //pathological
// ONCB -> ONGC
//g_ONCB_ONGC = 0.013 //normal
// g_ONCB_ONGC = 0.011 //pathological
//v_th_ONCB_ONGC = -40
// OFFCB -> OFFGC
//g_OFFCB_OFFGC = 0.013 //normal
// g_OFFCB_OFFGC = 0.0 //pathological
//v_th_OFFCB_OFFGC = -40
// OFFCB -> AIIAC
//g_OFFCB_AII = 0.0001 //normal
// g_OFFCB_AII = 0.000 //pathological
//===============//
// Gly syn(Inh) //
//===============//
// AIIAC -> OFFGC
//g_AC_OFFGC = 0.003 //normal
e_AC_OFFGC = -65
v_th_AC_OFFGC = -30
v_slp_AC_OFFGC = 10
tau_e_AC_OFFGC = 25
tau_r_AC_OFFGC = 800
u_AC_OFFGC = 0.2
// AIIAC -> OFFCB
//g_AC_OFFCB = 0.0001 //original
//g_AC_OFFCB = 0.001 //pathological model
v_th_AC_OFFCB = -30
v_slp_AC_OFFCB = 10
tau_e_AC_OFFCB = 25
tau_r_AC_OFFCB = 800
u_AC_OFFCB = 0.2