import numpy as np
import matplotlib.pyplot as plt
import moose
def plot_gate_params(chan,plotpow, VMIN=-0.1, VMAX=0.05, CAMIN=0, CAMAX=1):
#print "PLOT POWER", plotpow, chan.path,chan.Xpower
"""Plot the gate parameters like m and h of the channel."""
if chan.className == 'HHChannel':
cols=1
#n=range(0,2,1)
if chan.Zpower!=0 and (chan.Xpower!=0 or chan.Ypower!=0) and chan.useConcentration == True:
fig,axes=plt.subplots(3,cols,sharex=False)
axes[1].set_xlabel('voltage')
axes[2].set_xlabel('Calcium')
else:
fig,axes=plt.subplots(2,cols,sharex=True)
axes[1].set_xlabel('voltage')
plt.suptitle(chan.name)
if chan.Xpower > 0:
gate=moose.element(chan.path + '/gateX')
ma = gate.tableA
mb = gate.tableB
varray = np.linspace(gate.min, gate.max, len(ma))
axes[0].plot(varray, 1e3 / mb, label='mtau ' + chan.name)
if plotpow:
label = '(minf)**{}'.format(chan.Xpower)
inf = (ma / mb) ** chan.Xpower
else:
label = 'minf'
inf = ma / mb
axes[1].plot(varray, inf, label=label)
axes[1].axis([gate.min, gate.max, 0, 1])
if chan.Ypower > 0:
gate=moose.element(chan.path + '/gateY')
ha = gate.tableA
hb = gate.tableB
varray = np.linspace(gate.min, gate.max, len(ha))
axes[0].plot(varray, 1e3 / hb, label='htau ' + chan.name)
axes[1].plot(varray, ha / hb, label='hinf ' + chan.name)
axes[1].axis([gate.min, gate.max, 0, 1])
#
if chan.Zpower!=0:
gate=moose.element(chan.path + '/gateZ')
za = gate.tableA
zb = gate.tableB
xarray=np.linspace(gate.min,gate.max,len(za))
if (chan.Xpower==0 and chan.Ypower==0) or chan.useConcentration == False:
axes[0].plot(xarray,1e3/zb,label='ztau ' + chan.name)
axes[1].plot(xarray, za / zb, label='zinf' + chan.name)
if chan.useConcentration == True:
axes[1].set_xlabel('Calcium')
else:
axes[2].set_xscale("log")
axes[2].set_ylabel('ss, tau (s)')
axes[2].plot(xarray,1/zb,label='ztau ' + chan.name)
axes[2].plot(xarray, za / zb, label='zinf ' + chan.name)
axes[2].legend(loc='best', fontsize=8)
axes[0].set_ylabel('tau, ms')
axes[1].set_ylabel('steady state')
axes[0].legend(loc='best', fontsize=8)
axes[1].legend(loc='best', fontsize=8)
else: #Must be two-D tab channel
plt.figure()
ma = moose.element(chan.path + '/gateX').tableA
mb = moose.element(chan.path + '/gateX').tableB
ma = np.array(ma)
mb = np.array(mb)
plt.subplot(211)
plt.title(chan.name+'/gateX top: tau (ms), bottom: ss')
plt.imshow(1e3/mb,extent=[CAMIN,CAMAX,VMIN,VMAX],aspect='auto',origin='lower')
plt.colorbar()
plt.subplot(212)
if plotpow:
inf = (ma/mb)**chan.Xpower
else:
inf = ma/mb
plt.imshow(inf,extent=[CAMIN,CAMAX,VMIN,VMAX],aspect='auto',origin='lower')
plt.xlabel('Ca [mM]')
plt.ylabel('Vm [V]')
plt.colorbar()
if chan.Ypower > 0:
ha = moose.element(chan.path + '/gateY').tableA
hb = moose.element(chan.path + '/gateY').tableB
ha = np.array(ha)
hb = np.array(hb)
plt.figure()
plt.subplot(211)
plt.suptitle(chan.name+'/gateY tau')
plt.imshow(1e3/hb,extent=[CAMIN,CAMAX,VMIN,VMAX],aspect='auto')
plt.colorbar()
plt.subplot(212)
if plotpow:
inf = (ha/hb)**chan.Ypower
else:
inf = ha/hb
plt.imshow(inf,extent=[CAMIN,CAMAX,VMIN,VMAX],aspect='auto')
plt.xlabel('Ca [nM]')
plt.ylabel('Vm [V]')
plt.colorbar()
return