{
"manifest": {
"$BASE_DIR": "${configdir}",
"$OUTPUT_DIR": "$BASE_DIR/output"
},
"target_simulator": "NEURON",
"run": {
"tstart": 0.0,
"tstop": 1600.0,
"dt": 0.1,
"dL": 5,
"spike_threshold": -10,
"nsteps_block": 5000
},
"conditions": {
"celsius": 34.0,
"v_init": -80.0
},
"inputs": {
"exc_stim_spikes": {
"input_type": "spikes",
"module": "sonata",
"input_file": "$BASE_DIR/exc_stim_spikes.h5",
"node_set": "exc_stim"
},
"prox_inh_stim_spikes": {
"input_type": "spikes",
"module": "sonata",
"input_file": "$BASE_DIR/prox_inh_stim_spikes.h5",
"node_set": "prox_inh_stim"
},
"dist_inh_stim_spikes": {
"input_type": "spikes",
"module": "sonata",
"input_file": "$BASE_DIR/dist_inh_stim_spikes.h5",
"node_set": "dist_inh_stim"
}
},
"output": {
"log_file": "log.txt",
"output_dir": "$OUTPUT_DIR",
"spikes_file": "spikes.h5"
},
"reports": {
"v_report": {
"variable_name": "v",
"cells": "all",
"module": "membrane_report",
"sections": "somatic"
}
},
"node_sets_file": "$BASE_DIR/node_sets.json",
"network": "$BASE_DIR/circuit_config.json"
}