# L5NeuronSimulation Analyzing the firing properties of a single, detailed L5b PC neuron. DOCUMENTATION: https://l5neuronsimulation.readthedocs.io/en/latest/ ## Folder Structure ### Temporary #### These folders might be irrelevant or should be removed before publishing. Attenuation - investigated the attenuation of the cell. F-ICurve - used to plot F-ICurve. **NOT UP TO DATE** Resistance - looking at input resistance. ### Core Folders biophys_components - this is where mechanisms and templates are stored. This folder is used as the basis for all simulations in the project. Clustering - this is where I worked on building the clustering mechanisms. **MAYBE REMOVE** EPSP_Tuning - this folder has both old EPSP tuning for Song et al. and also the conductance scaling **MAYBE REFACTOR** FullSimulation - this is the main folder, where the full simulations are run. See README in folder for more. Group_EPSC_Tuning - where EPSC tuning is performed (on both basal and apical dendrites). HayFiringProperties - confirming that our cell model matches the experimental firing properties that Hay et al. 2011 tuned for. IPSC_Tuning - where IPSC tuning is performed (perisomatic, basal, and apical). MorphAnalysis - folder for exploring the morphology of the cell. Plot_Cell - folder for plotting the cell and synapse locations on the cell. ShortPlasticity - used to build and check short term plasticity for both excitation and inhibition. StepCurrent - used to ensure that a suprathreshold step current induces the proper behavior (as determined by Hay et al. 2011).