"""
my_batches.py
Batch simulations for EEE project
contact: joe.w.graham@gmail.com
"""
from collections import OrderedDict
import batch_utils
import numpy as np
import os
from cfg import cfg
batchoutputdir = "batch_data"
if not os.path.exists(batchoutputdir):
os.mkdir(batchoutputdir)
exp_iclamp_amp = [0.05, 0.1, 0.15, 0.2, 0.25, 0.3, 0.35, 0.4, 0.45, 0.5, 0.55, 0.6]
glut_stim_weight = [0.010, 0.011, 0.012, 0.013, 0.014, 0.015]
glut_stim_scale = 1.0
NMDAdecays = [75, 150, 300, 600, 1200]
NMDAlocs = [0.1, 0.3, 0.5, 0.7, 0.9]
numsyns = cfg.numsyns
###############################################################################
# Batches
# -------
#
###############################################################################
batches = {}
# # Batch template
# batch = {}
# batch["label"] = "my_batch"
# batch["cfgFile"] = "cfg.py"
# batch["netParamsFile"] = "netParams.py"
# params = OrderedDict()
# params["param1_name"] = [0.0, 0.10, 0.50, 1.0, 10.0]
# params["param2_name"] = [0.0, 0.10, 0.50, 1.0, 10.0]
# batch["params"] = params
# batches[batch["label"]] = batch
# # Varying NMDA decay time constant and glutamate stim amplitude
# batch = {}
# batch["label"] = "NMDAdecay_glutAmp"
# batch["cfgFile"] = "cfg.py"
# batch["netParamsFile"] = "netParams.py"
# params = OrderedDict()
# params["tau2NMDA"] = NMDAdecays
# params[('NetStim1', 'weight', 0)] = list(np.array(glut_stim_weight) * glut_stim_scale / numsyns)
# batch["params"] = params
# batches[batch["label"]] = batch
# # Varying glutamate stim location and glutamate stim amplitude
# batch = {}
# batch["label"] = "glutLoc_glutAmp"
# batch["cfgFile"] = "cfg.py"
# batch["netParamsFile"] = "netParams.py"
# params = OrderedDict()
# params[('NetStim1', 'loc')] = NMDAlocs
# params[('NetStim1', 'weight', 0)] = list(np.array(glut_stim_weight) * glut_stim_scale / numsyns)
# batch["params"] = params
# batches[batch["label"]] = batch
# # Varying glutamate stim amplitude (1D batch)
# batch = {}
# batch["label"] = "glutAmp"
# batch["cfgFile"] = "cfg.py"
# batch["netParamsFile"] = "netParams.py"
# params = OrderedDict()
# params[('NetStim1', 'weight', 0)] = list(np.array(glut_stim_weight) * glut_stim_scale / numsyns)
# batch["params"] = params
# batches[batch["label"]] = batch
# # Varying glutamate stim location (1D batch)
# batch = {}
# batch["label"] = "glutLoc"
# batch["cfgFile"] = "cfg.py"
# batch["netParamsFile"] = "netParams.py"
# params = OrderedDict()
# params[('NetStim1', 'loc')] = NMDAlocs
# batch["params"] = params
# batches[batch["label"]] = batch
# # Varying NMDA decay time constant (1D batch)
# batch = {}
# batch["label"] = "NMDAdecay"
# batch["cfgFile"] = "cfg.py"
# batch["netParamsFile"] = "netParams.py"
# params = OrderedDict()
# params["tau2NMDA"] = NMDAdecays
# batch["params"] = params
# batches[batch["label"]] = batch
# Varying number of syns (1D batch)
batch = {}
batch["label"] = "numsyns"
batch["cfgFile"] = "cfg.py"
batch["netParamsFile"] = "netParams.py"
params = OrderedDict()
params["numsyns"] = [1, 5, 10, 50, 100, 200]
batch["params"] = params
batches[batch["label"]] = batch
# Varying glutamate stim location and glutamate stim amplitude
batch = {}
batch["label"] = "numsyns_glutAmp"
batch["cfgFile"] = "cfg.py"
batch["netParamsFile"] = "netParams.py"
params = OrderedDict()
params["numsyns"] = [1, 5, 10, 50, 100, 200]
params[('NetStim1', 'weight', 0)] = list(np.array(glut_stim_weight) * glut_stim_scale / numsyns)
batch["params"] = params
batches[batch["label"]] = batch
###############################################################################
# Main code: runs all batches
###############################################################################
if __name__ == '__main__':
import time
start = time.time()
# Run all batches
for label, batch in batches.items():
print("Running batch with label: " + label)
print
batch_utils.run_batch(**batch)
stop = time.time()
print
print("Completed eee/sim/batches/batch_nospines_varsyns/my_batches.py")
print("Duration (s): " + str(stop-start))
print("Please close this terminal and open another.")