COMMENT
Noise current characterized by gaussian distribution
with mean mean and standerd deviation stdev.
Borrows from NetStim's code so it can be linked with an external instance
of the Random class in order to generate output that is independent of
other instances of InGau.
User specifies the time at which the noise starts,
and the duration of the noise.
Since a new value is drawn at each time step,
should be used only with fixed time step integration.
ENDCOMMENT
NEURON {
POINT_PROCESS InGauss
NONSPECIFIC_CURRENT i
RANGE mean, stdev
RANGE del, dur
THREADSAFE : true only if every instance has its own distinct Random
POINTER donotuse
}
UNITS {
(nA) = (nanoamp)
}
PARAMETER {
del (ms) : delay until noise starts
dur (ms) <0, 1e9> : duration of noise
mean = 0 (nA)
stdev = 1 (nA)
}
ASSIGNED {
dt (ms)
on
per (ms)
ival (nA)
i (nA)
donotuse
}
INITIAL {
per = dt
on = 0
ival = 0
i = 0
net_send(del, 1)
}
PROCEDURE seed(x) {
set_seed(x)
}
BEFORE BREAKPOINT {
i = ival
: printf("time %f \ti %f\n", t, ival)
}
BREAKPOINT { : this block must exist so that a current is actually generated
}
NET_RECEIVE (w) {
if (dur>0) {
if (flag==1) {
if (on==0) { : turn on
on=1
net_send(dur,1) : to turn it off
: ival = (hi-lo)*urand() + lo : first sample
ival = stdev*grand() + mean : first sample
net_send(per, 2) : prepare for next sample
} else {
if (on==1) { : turn off
on=0
ival = 0
}
}
}
if (flag==2) {
if (on==1) {
ival = stdev*grand() + mean
: printf("time %f \ti %f\n", t, ival)
net_send(per, 2) : prepare for next sample
}
}
}
}
VERBATIM
double nrn_random_pick(void* r);
void* nrn_random_arg(int argpos);
ENDVERBATIM
: FUNCTION erand() {
: FUNCTION urand() {
FUNCTION grand() {
VERBATIM
if (_p_donotuse) {
/*
: Supports separate independent but reproducible streams for
: each instance. However, the corresponding hoc Random
: distribution MUST be set to Random.uniform(0,1)
*/
// _lerand = nrn_random_pick(_p_donotuse);
// _lurand = nrn_random_pick(_p_donotuse);
_lgrand = nrn_random_pick(_p_donotuse);
}else{
/* only can be used in main thread */
if (_nt != nrn_threads) {
hoc_execerror("multithread random in InUnif"," only via hoc Random");
}
ENDVERBATIM
: the old standby. Cannot use if reproducible parallel sim
: independent of nhost or which host this instance is on
: is desired, since each instance on this cpu draws from
: the same stream
: erand = exprand(1)
: urand = scop_random()
grand = normrand(0,1)
: printf("%f\n", grand)
VERBATIM
}
ENDVERBATIM
}
PROCEDURE noiseFromRandom() {
VERBATIM
{
void** pv = (void**)(&_p_donotuse);
if (ifarg(1)) {
*pv = nrn_random_arg(1);
}else{
*pv = (void*)0;
}
}
ENDVERBATIM
}