/* Created by Language version: 7.7.0 */
/* NOT VECTORIZED */
#define NRN_VECTORIZED 0
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include "scoplib_ansi.h"
#undef PI
#define nil 0
#include "md1redef.h"
#include "section.h"
#include "nrniv_mf.h"
#include "md2redef.h"
#if METHOD3
extern int _method3;
#endif
#if !NRNGPU
#undef exp
#define exp hoc_Exp
extern double hoc_Exp(double);
#endif
#define nrn_init _nrn_init__ch_leak
#define _nrn_initial _nrn_initial__ch_leak
#define nrn_cur _nrn_cur__ch_leak
#define _nrn_current _nrn_current__ch_leak
#define nrn_jacob _nrn_jacob__ch_leak
#define nrn_state _nrn_state__ch_leak
#define _net_receive _net_receive__ch_leak
#define _threadargscomma_ /**/
#define _threadargsprotocomma_ /**/
#define _threadargs_ /**/
#define _threadargsproto_ /**/
/*SUPPRESS 761*/
/*SUPPRESS 762*/
/*SUPPRESS 763*/
/*SUPPRESS 765*/
extern double *getarg();
static double *_p; static Datum *_ppvar;
#define t nrn_threads->_t
#define dt nrn_threads->_dt
#define g _p[0]
#define gmax _p[1]
#define e _p[2]
#define i _p[3]
#define myi _p[4]
#define _g _p[5]
#if MAC
#if !defined(v)
#define v _mlhv
#endif
#if !defined(h)
#define h _mlhh
#endif
#endif
#if defined(__cplusplus)
extern "C" {
#endif
static int hoc_nrnpointerindex = -1;
/* external NEURON variables */
/* declaration of user functions */
static int _mechtype;
extern void _nrn_cacheloop_reg(int, int);
extern void hoc_register_prop_size(int, int, int);
extern void hoc_register_limits(int, HocParmLimits*);
extern void hoc_register_units(int, HocParmUnits*);
extern void nrn_promote(Prop*, int, int);
extern Memb_func* memb_func;
#define NMODL_TEXT 1
#if NMODL_TEXT
static const char* nmodl_file_text;
static const char* nmodl_filename;
extern void hoc_reg_nmodl_text(int, const char*);
extern void hoc_reg_nmodl_filename(int, const char*);
#endif
extern void _nrn_setdata_reg(int, void(*)(Prop*));
static void _setdata(Prop* _prop) {
_p = _prop->param; _ppvar = _prop->dparam;
}
static void _hoc_setdata() {
Prop *_prop, *hoc_getdata_range(int);
_prop = hoc_getdata_range(_mechtype);
_setdata(_prop);
hoc_retpushx(1.);
}
/* connect user functions to hoc names */
static VoidFunc hoc_intfunc[] = {
"setdata_ch_leak", _hoc_setdata,
0, 0
};
/* declare global and static user variables */
/* some parameters have upper and lower limits */
static HocParmLimits _hoc_parm_limits[] = {
0,0,0
};
static HocParmUnits _hoc_parm_units[] = {
"g_ch_leak", "mho/cm2",
"gmax_ch_leak", "mho/cm2",
"e_ch_leak", "mV",
"i_ch_leak", "mA/cm2",
"myi_ch_leak", "mA/cm2",
0,0
};
static double v = 0;
/* connect global user variables to hoc */
static DoubScal hoc_scdoub[] = {
0,0
};
static DoubVec hoc_vdoub[] = {
0,0,0
};
static double _sav_indep;
static void nrn_alloc(Prop*);
static void nrn_init(_NrnThread*, _Memb_list*, int);
static void nrn_state(_NrnThread*, _Memb_list*, int);
static void nrn_cur(_NrnThread*, _Memb_list*, int);
static void nrn_jacob(_NrnThread*, _Memb_list*, int);
/* connect range variables in _p that hoc is supposed to know about */
static const char *_mechanism[] = {
"7.7.0",
"ch_leak",
"g_ch_leak",
"gmax_ch_leak",
"e_ch_leak",
0,
"i_ch_leak",
"myi_ch_leak",
0,
0,
0};
extern Prop* need_memb(Symbol*);
static void nrn_alloc(Prop* _prop) {
Prop *prop_ion;
double *_p; Datum *_ppvar;
_p = nrn_prop_data_alloc(_mechtype, 6, _prop);
/*initialize range parameters*/
g = 0;
gmax = 0;
e = 0;
_prop->param = _p;
_prop->param_size = 6;
}
static void _initlists();
extern Symbol* hoc_lookup(const char*);
extern void _nrn_thread_reg(int, int, void(*)(Datum*));
extern void _nrn_thread_table_reg(int, void(*)(double*, Datum*, Datum*, _NrnThread*, int));
extern void hoc_register_tolerance(int, HocStateTolerance*, Symbol***);
extern void _cvode_abstol( Symbol**, double*, int);
void _ch_leak_reg() {
int _vectorized = 0;
_initlists();
register_mech(_mechanism, nrn_alloc,nrn_cur, nrn_jacob, nrn_state, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
#if NMODL_TEXT
hoc_reg_nmodl_text(_mechtype, nmodl_file_text);
hoc_reg_nmodl_filename(_mechtype, nmodl_filename);
#endif
hoc_register_prop_size(_mechtype, 6, 0);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 ch_leak /Users/salvadord/Documents/ISB/Models/M1_NetPyNE_CellReports_2023/sim/mod/ch_leak.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
static int _reset;
static char *modelname = "leak conductance (voltage independent)";
static int error;
static int _ninits = 0;
static int _match_recurse=1;
static void _modl_cleanup(){ _match_recurse=1;}
/*VERBATIM*/
#include <stdlib.h> /* Include this library so that the following
(innocuous) warning does not appear:
In function '_thread_cleanup':
warning: incompatible implicit declaration of
built-in function 'free' */
static void initmodel() {
int _i; double _save;_ninits++;
{
}
}
static void nrn_init(_NrnThread* _nt, _Memb_list* _ml, int _type){
Node *_nd; double _v; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
v = _v;
initmodel();
}}
static double _nrn_current(double _v){double _current=0.;v=_v;{ {
g = gmax ;
i = g * ( v - e ) ;
myi = i ;
}
_current += i;
} return _current;
}
static void nrn_cur(_NrnThread* _nt, _Memb_list* _ml, int _type){
Node *_nd; int* _ni; double _rhs, _v; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
_g = _nrn_current(_v + .001);
{ _rhs = _nrn_current(_v);
}
_g = (_g - _rhs)/.001;
#if CACHEVEC
if (use_cachevec) {
VEC_RHS(_ni[_iml]) -= _rhs;
}else
#endif
{
NODERHS(_nd) -= _rhs;
}
}}
static void nrn_jacob(_NrnThread* _nt, _Memb_list* _ml, int _type){
Node *_nd; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml];
#if CACHEVEC
if (use_cachevec) {
VEC_D(_ni[_iml]) += _g;
}else
#endif
{
_nd = _ml->_nodelist[_iml];
NODED(_nd) += _g;
}
}}
static void nrn_state(_NrnThread* _nt, _Memb_list* _ml, int _type){
}
static void terminal(){}
static void _initlists() {
int _i; static int _first = 1;
if (!_first) return;
_first = 0;
}
#if NMODL_TEXT
static const char* nmodl_filename = "/Users/salvadord/Documents/ISB/Models/M1_NetPyNE_CellReports_2023/sim/mod/ch_leak.mod";
static const char* nmodl_file_text =
"TITLE leak conductance (voltage independent)\n"
"\n"
"COMMENT\n"
"leak conductance (voltage independent)\n"
"\n"
"Ions: non-specific\n"
"\n"
"Style: quasi-ohmic\n"
"\n"
"From: unknown\n"
"\n"
"Updates:\n"
"2014 December (Marianne Bezaire): documented\n"
"ENDCOMMENT\n"
"\n"
"\n"
"VERBATIM\n"
"#include <stdlib.h> /* Include this library so that the following\n"
" (innocuous) warning does not appear:\n"
" In function '_thread_cleanup':\n"
" warning: incompatible implicit declaration of \n"
" built-in function 'free' */\n"
"ENDVERBATIM\n"
"\n"
"UNITS {\n"
" (mA) =(milliamp)\n"
" (mV) =(millivolt)\n"
"}\n"
" \n"
"NEURON { \n"
" SUFFIX ch_leak \n"
" NONSPECIFIC_CURRENT i\n"
" RANGE gmax, e, i\n"
" RANGE myi, g\n"
" THREADSAFE\n"
"}\n"
" \n"
"PARAMETER {\n"
" g (mho/cm2) : conductance of the leak channels \n"
" gmax (mho/cm2) : conductance of the leak channels \n"
" e (mV) : reversal potential of the leak channels\n"
"}\n"
"\n"
"ASSIGNED { : assigned variables are by default RANGE, but not available to hoc (unless RANGE in NEURON block) \n"
" v (mV) : membrane voltage\n"
" : available to all mechanisms by default, but for\n"
" : cross-simulator fluency, it is included here \n"
" i (mA/cm2) : current through the leak channels\n"
" myi (mA/cm2)\n"
"} \n"
"\n"
"BREAKPOINT {\n"
" g = gmax\n"
" i = g*(v-e) : solve for the current (at each dt)\n"
" myi = i\n"
"}\n"
"\n"
"\n"
"\n"
"\n"
"\n"
"\n"
;
#endif