/* Created by Language version: 7.7.0 */
/* NOT VECTORIZED */
#define NRN_VECTORIZED 0
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include "scoplib_ansi.h"
#undef PI
#define nil 0
#include "md1redef.h"
#include "section.h"
#include "nrniv_mf.h"
#include "md2redef.h"
#if METHOD3
extern int _method3;
#endif
#if !NRNGPU
#undef exp
#define exp hoc_Exp
extern double hoc_Exp(double);
#endif
#define nrn_init _nrn_init__dipole
#define _nrn_initial _nrn_initial__dipole
#define nrn_cur _nrn_cur__dipole
#define _nrn_current _nrn_current__dipole
#define nrn_jacob _nrn_jacob__dipole
#define nrn_state _nrn_state__dipole
#define _net_receive _net_receive__dipole
#define _threadargscomma_ /**/
#define _threadargsprotocomma_ /**/
#define _threadargs_ /**/
#define _threadargsproto_ /**/
/*SUPPRESS 761*/
/*SUPPRESS 762*/
/*SUPPRESS 763*/
/*SUPPRESS 765*/
extern double *getarg();
static double *_p; static Datum *_ppvar;
#define t nrn_threads->_t
#define dt nrn_threads->_dt
#define ia _p[0]
#define ri _p[1]
#define ztan _p[2]
#define Q _p[3]
#define pv *_ppvar[0]._pval
#define _p_pv _ppvar[0]._pval
#define Qsum *_ppvar[1]._pval
#define _p_Qsum _ppvar[1]._pval
#define Qtotal *_ppvar[2]._pval
#define _p_Qtotal _ppvar[2]._pval
#if MAC
#if !defined(v)
#define v _mlhv
#endif
#if !defined(h)
#define h _mlhh
#endif
#endif
#if defined(__cplusplus)
extern "C" {
#endif
static int hoc_nrnpointerindex = 0;
/* external NEURON variables */
/* declaration of user functions */
static int _mechtype;
extern void _nrn_cacheloop_reg(int, int);
extern void hoc_register_prop_size(int, int, int);
extern void hoc_register_limits(int, HocParmLimits*);
extern void hoc_register_units(int, HocParmUnits*);
extern void nrn_promote(Prop*, int, int);
extern Memb_func* memb_func;
#define NMODL_TEXT 1
#if NMODL_TEXT
static const char* nmodl_file_text;
static const char* nmodl_filename;
extern void hoc_reg_nmodl_text(int, const char*);
extern void hoc_reg_nmodl_filename(int, const char*);
#endif
extern void _nrn_setdata_reg(int, void(*)(Prop*));
static void _setdata(Prop* _prop) {
_p = _prop->param; _ppvar = _prop->dparam;
}
static void _hoc_setdata() {
Prop *_prop, *hoc_getdata_range(int);
_prop = hoc_getdata_range(_mechtype);
_setdata(_prop);
hoc_retpushx(1.);
}
/* connect user functions to hoc names */
static VoidFunc hoc_intfunc[] = {
"setdata_dipole", _hoc_setdata,
0, 0
};
/* declare global and static user variables */
/* some parameters have upper and lower limits */
static HocParmLimits _hoc_parm_limits[] = {
0,0,0
};
static HocParmUnits _hoc_parm_units[] = {
"ia_dipole", "nA",
"ri_dipole", "Mohm",
"ztan_dipole", "um",
"Q_dipole", "fAm",
"pv_dipole", "mV",
"Qsum_dipole", "fAm",
"Qtotal_dipole", "fAm",
0,0
};
static double v = 0;
/* connect global user variables to hoc */
static DoubScal hoc_scdoub[] = {
0,0
};
static DoubVec hoc_vdoub[] = {
0,0,0
};
static double _sav_indep;
static void _ba1() , _ba2() ;
static void nrn_alloc(Prop*);
static void nrn_init(_NrnThread*, _Memb_list*, int);
static void nrn_state(_NrnThread*, _Memb_list*, int);
/* connect range variables in _p that hoc is supposed to know about */
static const char *_mechanism[] = {
"7.7.0",
"dipole",
0,
"ia_dipole",
"ri_dipole",
"ztan_dipole",
"Q_dipole",
0,
0,
"pv_dipole",
"Qsum_dipole",
"Qtotal_dipole",
0};
extern Prop* need_memb(Symbol*);
static void nrn_alloc(Prop* _prop) {
Prop *prop_ion;
double *_p; Datum *_ppvar;
_p = nrn_prop_data_alloc(_mechtype, 4, _prop);
/*initialize range parameters*/
_prop->param = _p;
_prop->param_size = 4;
_ppvar = nrn_prop_datum_alloc(_mechtype, 3, _prop);
_prop->dparam = _ppvar;
/*connect ionic variables to this model*/
}
static void _initlists();
extern Symbol* hoc_lookup(const char*);
extern void _nrn_thread_reg(int, int, void(*)(Datum*));
extern void _nrn_thread_table_reg(int, void(*)(double*, Datum*, Datum*, _NrnThread*, int));
extern void hoc_register_tolerance(int, HocStateTolerance*, Symbol***);
extern void _cvode_abstol( Symbol**, double*, int);
void _dipole_reg() {
int _vectorized = 0;
_initlists();
register_mech(_mechanism, nrn_alloc,(void*)0, (void*)0, (void*)0, nrn_init, hoc_nrnpointerindex, 0);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
#if NMODL_TEXT
hoc_reg_nmodl_text(_mechtype, nmodl_file_text);
hoc_reg_nmodl_filename(_mechtype, nmodl_filename);
#endif
hoc_register_prop_size(_mechtype, 4, 3);
hoc_register_dparam_semantics(_mechtype, 0, "pointer");
hoc_register_dparam_semantics(_mechtype, 1, "pointer");
hoc_register_dparam_semantics(_mechtype, 2, "pointer");
hoc_reg_ba(_mechtype, _ba1, 22);
hoc_reg_ba(_mechtype, _ba2, 23);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 dipole /Users/salvadord/Documents/ISB/Models/M1_NetPyNE_CellReports_2023/sim/mod/dipole.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
static int _reset;
static char *modelname = "";
static int error;
static int _ninits = 0;
static int _match_recurse=1;
static void _modl_cleanup(){ _match_recurse=1;}
/* AFTER SOLVE */
static void _ba1(Node*_nd, double* _pp, Datum* _ppd, Datum* _thread, _NrnThread* _nt) {
_p = _pp; _ppvar = _ppd;
v = NODEV(_nd);
ia = ( pv - v ) / ri ;
Q = ia * ztan ;
Qsum = Qsum + Q ;
Qtotal = Qtotal + Q ;
}
/* AFTER INITIAL */
static void _ba2(Node*_nd, double* _pp, Datum* _ppd, Datum* _thread, _NrnThread* _nt) {
_p = _pp; _ppvar = _ppd;
v = NODEV(_nd);
ia = ( pv - v ) / ri ;
Q = ia * ztan ;
Qsum = Qsum + Q ;
Qtotal = Qtotal + Q ;
}
static void initmodel() {
int _i; double _save;_ninits++;
{
}
}
static void nrn_init(_NrnThread* _nt, _Memb_list* _ml, int _type){
Node *_nd; double _v; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
v = _v;
initmodel();
}}
static double _nrn_current(double _v){double _current=0.;v=_v;{
} return _current;
}
static void nrn_state(_NrnThread* _nt, _Memb_list* _ml, int _type){
Node *_nd; double _v = 0.0; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
_nd = _ml->_nodelist[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
v=_v;
{
}}
}
static void terminal(){}
static void _initlists() {
int _i; static int _first = 1;
if (!_first) return;
_first = 0;
}
#if NMODL_TEXT
static const char* nmodl_filename = "/Users/salvadord/Documents/ISB/Models/M1_NetPyNE_CellReports_2023/sim/mod/dipole.mod";
static const char* nmodl_file_text =
": dipole.mod - mod file for range variable dipole\n"
":\n"
": v 1.9.1m0\n"
": rev 2015-12-15 (SL: minor)\n"
": last rev: (SL: Added back Qtotal, which WAS used in par version)\n"
"\n"
"NEURON {\n"
" SUFFIX dipole\n"
" RANGE ri, ia, Q, ztan\n"
" POINTER pv\n"
"\n"
" : for density. sums into Dipole at section position 1\n"
" POINTER Qsum\n"
" POINTER Qtotal\n"
"}\n"
"\n"
"UNITS {\n"
" (nA) = (nanoamp)\n"
" (mV) = (millivolt)\n"
" (Mohm) = (megaohm)\n"
" (um) = (micrometer)\n"
" (Am) = (amp meter)\n"
" (fAm) = (femto amp meter)\n"
"}\n"
"\n"
"ASSIGNED {\n"
" ia (nA)\n"
" ri (Mohm)\n"
" pv (mV)\n"
" v (mV)\n"
" ztan (um)\n"
" Q (fAm)\n"
"\n"
" : human dipole order of 10 nAm\n"
" Qsum (fAm)\n"
" Qtotal (fAm)\n"
"}\n"
"\n"
": solve for v's first then use them\n"
"AFTER SOLVE {\n"
" ia = (pv - v) / ri\n"
" Q = ia * ztan\n"
" Qsum = Qsum + Q\n"
" Qtotal = Qtotal + Q\n"
"}\n"
"\n"
"AFTER INITIAL {\n"
" ia = (pv - v) / ri\n"
" Q = ia * ztan\n"
" Qsum = Qsum + Q\n"
" Qtotal = Qtotal + Q\n"
"}\n"
;
#endif