/* Created by Language version: 7.7.0 */
/* NOT VECTORIZED */
#define NRN_VECTORIZED 0
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include "scoplib_ansi.h"
#undef PI
#define nil 0
#include "md1redef.h"
#include "section.h"
#include "nrniv_mf.h"
#include "md2redef.h"
#if METHOD3
extern int _method3;
#endif
#if !NRNGPU
#undef exp
#define exp hoc_Exp
extern double hoc_Exp(double);
#endif
#define nrn_init _nrn_init__Dipole
#define _nrn_initial _nrn_initial__Dipole
#define nrn_cur _nrn_cur__Dipole
#define _nrn_current _nrn_current__Dipole
#define nrn_jacob _nrn_jacob__Dipole
#define nrn_state _nrn_state__Dipole
#define _net_receive _net_receive__Dipole
#define _threadargscomma_ /**/
#define _threadargsprotocomma_ /**/
#define _threadargs_ /**/
#define _threadargsproto_ /**/
/*SUPPRESS 761*/
/*SUPPRESS 762*/
/*SUPPRESS 763*/
/*SUPPRESS 765*/
extern double *getarg();
static double *_p; static Datum *_ppvar;
#define t nrn_threads->_t
#define dt nrn_threads->_dt
#define ia _p[0]
#define ri _p[1]
#define ztan _p[2]
#define Q _p[3]
#define Qsum _p[4]
#define _nd_area *_ppvar[0]._pval
#define pv *_ppvar[2]._pval
#define _p_pv _ppvar[2]._pval
#define Qtotal *_ppvar[3]._pval
#define _p_Qtotal _ppvar[3]._pval
#if MAC
#if !defined(v)
#define v _mlhv
#endif
#if !defined(h)
#define h _mlhh
#endif
#endif
#if defined(__cplusplus)
extern "C" {
#endif
static int hoc_nrnpointerindex = 2;
/* external NEURON variables */
/* declaration of user functions */
static int _mechtype;
extern void _nrn_cacheloop_reg(int, int);
extern void hoc_register_prop_size(int, int, int);
extern void hoc_register_limits(int, HocParmLimits*);
extern void hoc_register_units(int, HocParmUnits*);
extern void nrn_promote(Prop*, int, int);
extern Memb_func* memb_func;
#define NMODL_TEXT 1
#if NMODL_TEXT
static const char* nmodl_file_text;
static const char* nmodl_filename;
extern void hoc_reg_nmodl_text(int, const char*);
extern void hoc_reg_nmodl_filename(int, const char*);
#endif
extern Prop* nrn_point_prop_;
static int _pointtype;
static void* _hoc_create_pnt(_ho) Object* _ho; { void* create_point_process();
return create_point_process(_pointtype, _ho);
}
static void _hoc_destroy_pnt();
static double _hoc_loc_pnt(_vptr) void* _vptr; {double loc_point_process();
return loc_point_process(_pointtype, _vptr);
}
static double _hoc_has_loc(_vptr) void* _vptr; {double has_loc_point();
return has_loc_point(_vptr);
}
static double _hoc_get_loc_pnt(_vptr)void* _vptr; {
double get_loc_point_process(); return (get_loc_point_process(_vptr));
}
extern void _nrn_setdata_reg(int, void(*)(Prop*));
static void _setdata(Prop* _prop) {
_p = _prop->param; _ppvar = _prop->dparam;
}
static void _hoc_setdata(void* _vptr) { Prop* _prop;
_prop = ((Point_process*)_vptr)->_prop;
_setdata(_prop);
}
/* connect user functions to hoc names */
static VoidFunc hoc_intfunc[] = {
0,0
};
static Member_func _member_func[] = {
"loc", _hoc_loc_pnt,
"has_loc", _hoc_has_loc,
"get_loc", _hoc_get_loc_pnt,
0, 0
};
/* declare global and static user variables */
/* some parameters have upper and lower limits */
static HocParmLimits _hoc_parm_limits[] = {
0,0,0
};
static HocParmUnits _hoc_parm_units[] = {
"ia", "nA",
"ri", "Mohm",
"ztan", "um",
"Q", "fAm",
"Qsum", "fAm",
"pv", "mV",
"Qtotal", "fAm",
0,0
};
static double v = 0;
/* connect global user variables to hoc */
static DoubScal hoc_scdoub[] = {
0,0
};
static DoubVec hoc_vdoub[] = {
0,0,0
};
static double _sav_indep;
static void _ba1() , _ba2() , _ba3() , _ba4() ;
static void nrn_alloc(Prop*);
static void nrn_init(_NrnThread*, _Memb_list*, int);
static void nrn_state(_NrnThread*, _Memb_list*, int);
static void _hoc_destroy_pnt(_vptr) void* _vptr; {
destroy_point_process(_vptr);
}
/* connect range variables in _p that hoc is supposed to know about */
static const char *_mechanism[] = {
"7.7.0",
"Dipole",
0,
"ia",
"ri",
"ztan",
"Q",
"Qsum",
0,
0,
"pv",
"Qtotal",
0};
extern Prop* need_memb(Symbol*);
static void nrn_alloc(Prop* _prop) {
Prop *prop_ion;
double *_p; Datum *_ppvar;
if (nrn_point_prop_) {
_prop->_alloc_seq = nrn_point_prop_->_alloc_seq;
_p = nrn_point_prop_->param;
_ppvar = nrn_point_prop_->dparam;
}else{
_p = nrn_prop_data_alloc(_mechtype, 5, _prop);
/*initialize range parameters*/
}
_prop->param = _p;
_prop->param_size = 5;
if (!nrn_point_prop_) {
_ppvar = nrn_prop_datum_alloc(_mechtype, 4, _prop);
}
_prop->dparam = _ppvar;
/*connect ionic variables to this model*/
}
static void _initlists();
extern Symbol* hoc_lookup(const char*);
extern void _nrn_thread_reg(int, int, void(*)(Datum*));
extern void _nrn_thread_table_reg(int, void(*)(double*, Datum*, Datum*, _NrnThread*, int));
extern void hoc_register_tolerance(int, HocStateTolerance*, Symbol***);
extern void _cvode_abstol( Symbol**, double*, int);
void _dipole_pp_reg() {
int _vectorized = 0;
_initlists();
_pointtype = point_register_mech(_mechanism,
nrn_alloc,(void*)0, (void*)0, (void*)0, nrn_init,
hoc_nrnpointerindex, 0,
_hoc_create_pnt, _hoc_destroy_pnt, _member_func);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
#if NMODL_TEXT
hoc_reg_nmodl_text(_mechtype, nmodl_file_text);
hoc_reg_nmodl_filename(_mechtype, nmodl_filename);
#endif
hoc_register_prop_size(_mechtype, 5, 4);
hoc_register_dparam_semantics(_mechtype, 0, "area");
hoc_register_dparam_semantics(_mechtype, 1, "pntproc");
hoc_register_dparam_semantics(_mechtype, 2, "pointer");
hoc_register_dparam_semantics(_mechtype, 3, "pointer");
hoc_reg_ba(_mechtype, _ba1, 22);
hoc_reg_ba(_mechtype, _ba2, 23);
hoc_reg_ba(_mechtype, _ba3, 13);
hoc_reg_ba(_mechtype, _ba4, 11);
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 Dipole /Users/salvadord/Documents/ISB/Models/M1_NetPyNE_CellReports_2023/sim/mod/dipole_pp.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
static int _reset;
static char *modelname = "";
static int error;
static int _ninits = 0;
static int _match_recurse=1;
static void _modl_cleanup(){ _match_recurse=1;}
/* AFTER SOLVE */
static void _ba1(Node*_nd, double* _pp, Datum* _ppd, Datum* _thread, _NrnThread* _nt) {
_p = _pp; _ppvar = _ppd;
v = NODEV(_nd);
ia = ( pv - v ) / ri ;
Q = ia * ztan ;
Qsum = Qsum + Q ;
Qtotal = Qtotal + Q ;
}
/* AFTER INITIAL */
static void _ba2(Node*_nd, double* _pp, Datum* _ppd, Datum* _thread, _NrnThread* _nt) {
_p = _pp; _ppvar = _ppd;
v = NODEV(_nd);
ia = ( pv - v ) / ri ;
Q = ia * ztan ;
Qsum = Qsum + Q ;
Qtotal = Qtotal + Q ;
}
/* BEFORE INITIAL */
static void _ba3(Node*_nd, double* _pp, Datum* _ppd, Datum* _thread, _NrnThread* _nt) {
_p = _pp; _ppvar = _ppd;
v = NODEV(_nd);
Qsum = 0.0 ;
Qtotal = 0.0 ;
}
/* BEFORE BREAKPOINT */
static void _ba4(Node*_nd, double* _pp, Datum* _ppd, Datum* _thread, _NrnThread* _nt) {
_p = _pp; _ppvar = _ppd;
v = NODEV(_nd);
Qsum = 0.0 ;
Qtotal = 0.0 ;
}
static void initmodel() {
int _i; double _save;_ninits++;
{
}
}
static void nrn_init(_NrnThread* _nt, _Memb_list* _ml, int _type){
Node *_nd; double _v; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
v = _v;
initmodel();
}}
static double _nrn_current(double _v){double _current=0.;v=_v;{
} return _current;
}
static void nrn_state(_NrnThread* _nt, _Memb_list* _ml, int _type){
Node *_nd; double _v = 0.0; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
_nd = _ml->_nodelist[_iml];
#if CACHEVEC
if (use_cachevec) {
_v = VEC_V(_ni[_iml]);
}else
#endif
{
_nd = _ml->_nodelist[_iml];
_v = NODEV(_nd);
}
v=_v;
{
}}
}
static void terminal(){}
static void _initlists() {
int _i; static int _first = 1;
if (!_first) return;
_first = 0;
}
#if NMODL_TEXT
static const char* nmodl_filename = "/Users/salvadord/Documents/ISB/Models/M1_NetPyNE_CellReports_2023/sim/mod/dipole_pp.mod";
static const char* nmodl_file_text =
": dipole_pp.mod - creates point process mechanism Dipole\n"
":\n"
": v 1.9.1m0\n"
": rev 2015-12-15 (SL: minor)\n"
": last rev: (SL: added Qtotal back, used for par calc)\n"
"\n"
"NEURON {\n"
" POINT_PROCESS Dipole\n"
" RANGE ri, ia, Q, ztan\n"
" POINTER pv\n"
"\n"
" : for POINT_PROCESS. Gets additions from dipole\n"
" RANGE Qsum\n"
" POINTER Qtotal\n"
"}\n"
"\n"
"UNITS {\n"
" (nA) = (nanoamp)\n"
" (mV) = (millivolt)\n"
" (Mohm) = (megaohm)\n"
" (um) = (micrometer)\n"
" (Am) = (amp meter)\n"
" (fAm) = (femto amp meter)\n"
"}\n"
"\n"
"ASSIGNED {\n"
" ia (nA)\n"
" ri (Mohm)\n"
" pv (mV)\n"
" v (mV)\n"
" ztan (um)\n"
" Q (fAm)\n"
" Qsum (fAm)\n"
" Qtotal (fAm)\n"
"}\n"
"\n"
": solve for v's first then use them\n"
"AFTER SOLVE {\n"
" ia = (pv - v) / ri\n"
" Q = ia * ztan\n"
" Qsum = Qsum + Q\n"
" Qtotal = Qtotal + Q\n"
"}\n"
"\n"
"AFTER INITIAL {\n"
" ia = (pv - v) / ri\n"
" Q = ia * ztan\n"
" Qsum = Qsum + Q\n"
" Qtotal = Qtotal + Q\n"
"}\n"
"\n"
": following needed for POINT_PROCESS only but will work if also in SUFFIX\n"
"BEFORE INITIAL {\n"
" Qsum = 0\n"
" Qtotal = 0\n"
"}\n"
"\n"
"BEFORE BREAKPOINT {\n"
" Qsum = 0\n"
" Qtotal = 0\n"
"}\n"
;
#endif