/* Created by Language version: 7.7.0 */
/* VECTORIZED */
#define NRN_VECTORIZED 1
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include "scoplib_ansi.h"
#undef PI
#define nil 0
#include "md1redef.h"
#include "section.h"
#include "nrniv_mf.h"
#include "md2redef.h"
#if METHOD3
extern int _method3;
#endif
#if !NRNGPU
#undef exp
#define exp hoc_Exp
extern double hoc_Exp(double);
#endif
#define nrn_init _nrn_init__VecStim
#define _nrn_initial _nrn_initial__VecStim
#define nrn_cur _nrn_cur__VecStim
#define _nrn_current _nrn_current__VecStim
#define nrn_jacob _nrn_jacob__VecStim
#define nrn_state _nrn_state__VecStim
#define _net_receive _net_receive__VecStim
#define element element__VecStim
#define play play__VecStim
#define _threadargscomma_ _p, _ppvar, _thread, _nt,
#define _threadargsprotocomma_ double* _p, Datum* _ppvar, Datum* _thread, _NrnThread* _nt,
#define _threadargs_ _p, _ppvar, _thread, _nt
#define _threadargsproto_ double* _p, Datum* _ppvar, Datum* _thread, _NrnThread* _nt
/*SUPPRESS 761*/
/*SUPPRESS 762*/
/*SUPPRESS 763*/
/*SUPPRESS 765*/
extern double *getarg();
/* Thread safe. No static _p or _ppvar. */
#define t _nt->_t
#define dt _nt->_dt
#define index _p[0]
#define etime _p[1]
#define space _p[2]
#define v _p[3]
#define _tsav _p[4]
#define _nd_area *_ppvar[0]._pval
#if MAC
#if !defined(v)
#define v _mlhv
#endif
#if !defined(h)
#define h _mlhh
#endif
#endif
#if defined(__cplusplus)
extern "C" {
#endif
static int hoc_nrnpointerindex = -1;
static Datum* _extcall_thread;
static Prop* _extcall_prop;
/* external NEURON variables */
/* declaration of user functions */
static double _hoc_element();
static double _hoc_play();
static int _mechtype;
extern void _nrn_cacheloop_reg(int, int);
extern void hoc_register_prop_size(int, int, int);
extern void hoc_register_limits(int, HocParmLimits*);
extern void hoc_register_units(int, HocParmUnits*);
extern void nrn_promote(Prop*, int, int);
extern Memb_func* memb_func;
#define NMODL_TEXT 1
#if NMODL_TEXT
static const char* nmodl_file_text;
static const char* nmodl_filename;
extern void hoc_reg_nmodl_text(int, const char*);
extern void hoc_reg_nmodl_filename(int, const char*);
#endif
extern Prop* nrn_point_prop_;
static int _pointtype;
static void* _hoc_create_pnt(_ho) Object* _ho; { void* create_point_process();
return create_point_process(_pointtype, _ho);
}
static void _hoc_destroy_pnt();
static double _hoc_loc_pnt(_vptr) void* _vptr; {double loc_point_process();
return loc_point_process(_pointtype, _vptr);
}
static double _hoc_has_loc(_vptr) void* _vptr; {double has_loc_point();
return has_loc_point(_vptr);
}
static double _hoc_get_loc_pnt(_vptr)void* _vptr; {
double get_loc_point_process(); return (get_loc_point_process(_vptr));
}
extern void _nrn_setdata_reg(int, void(*)(Prop*));
static void _setdata(Prop* _prop) {
_extcall_prop = _prop;
}
static void _hoc_setdata(void* _vptr) { Prop* _prop;
_prop = ((Point_process*)_vptr)->_prop;
_setdata(_prop);
}
/* connect user functions to hoc names */
static VoidFunc hoc_intfunc[] = {
0,0
};
static Member_func _member_func[] = {
"loc", _hoc_loc_pnt,
"has_loc", _hoc_has_loc,
"get_loc", _hoc_get_loc_pnt,
"element", _hoc_element,
"play", _hoc_play,
0, 0
};
/* declare global and static user variables */
/* some parameters have upper and lower limits */
static HocParmLimits _hoc_parm_limits[] = {
0,0,0
};
static HocParmUnits _hoc_parm_units[] = {
0,0
};
/* connect global user variables to hoc */
static DoubScal hoc_scdoub[] = {
0,0
};
static DoubVec hoc_vdoub[] = {
0,0,0
};
static double _sav_indep;
static void nrn_alloc(Prop*);
static void nrn_init(_NrnThread*, _Memb_list*, int);
static void nrn_state(_NrnThread*, _Memb_list*, int);
static void _hoc_destroy_pnt(_vptr) void* _vptr; {
destroy_point_process(_vptr);
}
/* connect range variables in _p that hoc is supposed to know about */
static const char *_mechanism[] = {
"7.7.0",
"VecStim",
0,
0,
0,
0};
extern Prop* need_memb(Symbol*);
static void nrn_alloc(Prop* _prop) {
Prop *prop_ion;
double *_p; Datum *_ppvar;
if (nrn_point_prop_) {
_prop->_alloc_seq = nrn_point_prop_->_alloc_seq;
_p = nrn_point_prop_->param;
_ppvar = nrn_point_prop_->dparam;
}else{
_p = nrn_prop_data_alloc(_mechtype, 5, _prop);
/*initialize range parameters*/
}
_prop->param = _p;
_prop->param_size = 5;
if (!nrn_point_prop_) {
_ppvar = nrn_prop_datum_alloc(_mechtype, 3, _prop);
}
_prop->dparam = _ppvar;
/*connect ionic variables to this model*/
}
static void _initlists();
#define _tqitem &(_ppvar[2]._pvoid)
static void _net_receive(Point_process*, double*, double);
extern Symbol* hoc_lookup(const char*);
extern void _nrn_thread_reg(int, int, void(*)(Datum*));
extern void _nrn_thread_table_reg(int, void(*)(double*, Datum*, Datum*, _NrnThread*, int));
extern void hoc_register_tolerance(int, HocStateTolerance*, Symbol***);
extern void _cvode_abstol( Symbol**, double*, int);
void _vecstim_reg() {
int _vectorized = 1;
_initlists();
_pointtype = point_register_mech(_mechanism,
nrn_alloc,(void*)0, (void*)0, (void*)0, nrn_init,
hoc_nrnpointerindex, 1,
_hoc_create_pnt, _hoc_destroy_pnt, _member_func);
_mechtype = nrn_get_mechtype(_mechanism[1]);
_nrn_setdata_reg(_mechtype, _setdata);
#if NMODL_TEXT
hoc_reg_nmodl_text(_mechtype, nmodl_file_text);
hoc_reg_nmodl_filename(_mechtype, nmodl_filename);
#endif
hoc_register_prop_size(_mechtype, 5, 3);
hoc_register_dparam_semantics(_mechtype, 0, "area");
hoc_register_dparam_semantics(_mechtype, 1, "pntproc");
hoc_register_dparam_semantics(_mechtype, 2, "netsend");
add_nrn_artcell(_mechtype, 2);
add_nrn_has_net_event(_mechtype);
pnt_receive[_mechtype] = _net_receive;
pnt_receive_size[_mechtype] = 1;
hoc_register_var(hoc_scdoub, hoc_vdoub, hoc_intfunc);
ivoc_help("help ?1 VecStim /Users/salvadord/Documents/ISB/Models/M1_NetPyNE_CellReports_2023/sim/mod/vecstim.mod\n");
hoc_register_limits(_mechtype, _hoc_parm_limits);
hoc_register_units(_mechtype, _hoc_parm_units);
}
static int _reset;
static char *modelname = "";
static int error;
static int _ninits = 0;
static int _match_recurse=1;
static void _modl_cleanup(){ _match_recurse=1;}
static int element(_threadargsproto_);
static int play(_threadargsproto_);
static void _net_receive (_pnt, _args, _lflag) Point_process* _pnt; double* _args; double _lflag;
{ double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt;
_thread = (Datum*)0; _nt = (_NrnThread*)_pnt->_vnt; _p = _pnt->_prop->param; _ppvar = _pnt->_prop->dparam;
if (_tsav > t){ extern char* hoc_object_name(); hoc_execerror(hoc_object_name(_pnt->ob), ":Event arrived out of order. Must call ParallelContext.set_maxstep AFTER assigning minimum NetCon.delay");}
_tsav = t; if (_lflag == 1. ) {*(_tqitem) = 0;}
{
if ( _lflag == 1.0 ) {
net_event ( _pnt, t ) ;
}
if ( _lflag == 1.0 || _lflag == 2.0 ) {
element ( _threadargs_ ) ;
if ( index > 0.0 ) {
if ( etime - t >= 0.0 ) {
artcell_net_send ( _tqitem, _args, _pnt, t + etime - t , 1.0 ) ;
}
else {
printf ( "Event in the stimulus vector at time %g is omitted since has value less than t=%g!\n" , etime , t ) ;
artcell_net_send ( _tqitem, _args, _pnt, t + 0.0 , 2.0 ) ;
}
}
}
} }
/*VERBATIM*/
extern double* vector_vec();
extern int vector_capacity();
extern void* vector_arg();
static int element ( _threadargsproto_ ) {
/*VERBATIM*/
{ void* vv; int i, size; double* px;
i = (int)index;
if (i >= 0) {
vv = *((void**)(&space));
if (vv) {
size = vector_capacity(vv);
px = vector_vec(vv);
if (i < size) {
etime = px[i];
index += 1.;
}else{
index = -1.;
}
}else{
index = -1.;
}
}
}
return 0; }
static double _hoc_element(void* _vptr) {
double _r;
double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt;
_p = ((Point_process*)_vptr)->_prop->param;
_ppvar = ((Point_process*)_vptr)->_prop->dparam;
_thread = _extcall_thread;
_nt = (_NrnThread*)((Point_process*)_vptr)->_vnt;
_r = 1.;
element ( _p, _ppvar, _thread, _nt );
return(_r);
}
static int play ( _threadargsproto_ ) {
/*VERBATIM*/
void** vv;
vv = (void**)(&space);
*vv = (void*)0;
if (ifarg(1)) {
*vv = vector_arg(1);
}
return 0; }
static double _hoc_play(void* _vptr) {
double _r;
double* _p; Datum* _ppvar; Datum* _thread; _NrnThread* _nt;
_p = ((Point_process*)_vptr)->_prop->param;
_ppvar = ((Point_process*)_vptr)->_prop->dparam;
_thread = _extcall_thread;
_nt = (_NrnThread*)((Point_process*)_vptr)->_vnt;
_r = 1.;
play ( _p, _ppvar, _thread, _nt );
return(_r);
}
static void initmodel(double* _p, Datum* _ppvar, Datum* _thread, _NrnThread* _nt) {
int _i; double _save;{
{
index = 0.0 ;
element ( _threadargs_ ) ;
if ( index > 0.0 ) {
if ( etime - t >= 0.0 ) {
artcell_net_send ( _tqitem, (double*)0, _ppvar[1]._pvoid, t + etime - t , 1.0 ) ;
}
else {
printf ( "Event in the stimulus vector at time %g is omitted since has value less than t=%g!\n" , etime , t ) ;
artcell_net_send ( _tqitem, (double*)0, _ppvar[1]._pvoid, t + 0.0 , 2.0 ) ;
}
}
}
}
}
static void nrn_init(_NrnThread* _nt, _Memb_list* _ml, int _type){
double* _p; Datum* _ppvar; Datum* _thread;
Node *_nd; double _v; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
_thread = _ml->_thread;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
_tsav = -1e20;
initmodel(_p, _ppvar, _thread, _nt);
}
}
static double _nrn_current(double* _p, Datum* _ppvar, Datum* _thread, _NrnThread* _nt, double _v){double _current=0.;v=_v;{
} return _current;
}
static void nrn_state(_NrnThread* _nt, _Memb_list* _ml, int _type) {
double* _p; Datum* _ppvar; Datum* _thread;
Node *_nd; double _v = 0.0; int* _ni; int _iml, _cntml;
#if CACHEVEC
_ni = _ml->_nodeindices;
#endif
_cntml = _ml->_nodecount;
_thread = _ml->_thread;
for (_iml = 0; _iml < _cntml; ++_iml) {
_p = _ml->_data[_iml]; _ppvar = _ml->_pdata[_iml];
_nd = _ml->_nodelist[_iml];
v=_v;
{
}}
}
static void terminal(){}
static void _initlists(){
double _x; double* _p = &_x;
int _i; static int _first = 1;
if (!_first) return;
_first = 0;
}
#if defined(__cplusplus)
} /* extern "C" */
#endif
#if NMODL_TEXT
static const char* nmodl_filename = "/Users/salvadord/Documents/ISB/Models/M1_NetPyNE_CellReports_2023/sim/mod/vecstim.mod";
static const char* nmodl_file_text =
": $Id: vecstim.mod,v 1.3 2010/12/13 21:29:27 samn Exp $ \n"
": Vector stream of events\n"
"\n"
"NEURON {\n"
" THREADSAFE\n"
" ARTIFICIAL_CELL VecStim \n"
"}\n"
"\n"
"ASSIGNED {\n"
" index\n"
" etime (ms)\n"
" space\n"
"}\n"
"\n"
"INITIAL {\n"
" index = 0\n"
" element()\n"
" if (index > 0) {\n"
" if (etime - t>=0) {\n"
" net_send(etime - t, 1)\n"
" } else {\n"
" printf(\"Event in the stimulus vector at time %g is omitted since has value less than t=%g!\\n\", etime, t)\n"
" net_send(0, 2)\n"
" }\n"
" }\n"
"}\n"
"\n"
"NET_RECEIVE (w) {\n"
" if (flag == 1) { net_event(t) }\n"
" if (flag == 1 || flag == 2) {\n"
" element()\n"
" if (index > 0) { \n"
" if (etime - t>=0) {\n"
" net_send(etime - t, 1)\n"
" } else {\n"
" printf(\"Event in the stimulus vector at time %g is omitted since has value less than t=%g!\\n\", etime, t)\n"
" net_send(0, 2)\n"
" }\n"
" }\n"
" }\n"
"}\n"
"\n"
"VERBATIM\n"
"extern double* vector_vec();\n"
"extern int vector_capacity();\n"
"extern void* vector_arg();\n"
"ENDVERBATIM\n"
"\n"
"PROCEDURE element() {\n"
"VERBATIM \n"
" { void* vv; int i, size; double* px;\n"
" i = (int)index;\n"
" if (i >= 0) {\n"
" vv = *((void**)(&space));\n"
" if (vv) {\n"
" size = vector_capacity(vv);\n"
" px = vector_vec(vv);\n"
" if (i < size) {\n"
" etime = px[i];\n"
" index += 1.;\n"
" }else{\n"
" index = -1.;\n"
" }\n"
" }else{\n"
" index = -1.;\n"
" }\n"
" }\n"
" }\n"
"ENDVERBATIM\n"
"}\n"
"\n"
"PROCEDURE play() {\n"
"VERBATIM\n"
" void** vv;\n"
" vv = (void**)(&space);\n"
" *vv = (void*)0;\n"
" if (ifarg(1)) {\n"
" *vv = vector_arg(1);\n"
" }\n"
"ENDVERBATIM\n"
"}\n"
" \n"
"\n"
;
#endif