import os, sys
import matplotlib
matplotlib.use('Agg')
from pypcsim import *
import pypcsimplus as pcsim
from numpy import *
import random, getopt
import numpy
from datetime import datetime
from math import *
from tables import *
from math import exp
from mpi4py import MPI
import LiquidModel400 as Liq
import SpeechStimulusInputModel as Inp
from traceback import *
class Liquid400Experiment(pcsim.Experiment):
def defaultExpParameters(self):
ep = self.expParams
# General simulation parameters
ep.DTsim = 1e-4
ep.trialT = 2.5
# Network distribution parameters
ep.netType = 'MT'
ep.nThreads = 2
ep.minDelay = 1e-3
ep.maxDelay = 2
# Seeds of the experiment
ep.numpyRandomSeed = 31342
ep.pyRandomSeed = 124243
ep.constructionSeed = 3224356
ep.simulationSeed = 134252439
ep.runMode = "long"
ep.liquid = "Liq.LiquidModel400"
ep.input = "Inp.SpeechStimulusInputModel"
ep.ipEngineID = 0
def setupModels(self):
p = self.modelParams
ep = self.expParams
m = self.models
net = self.net
ep.Tsim = ep.trialT
random.seed(ep.pyRandomSeed)
numpy.random.seed(int(ep.numpyRandomSeed))
m.liquid = eval(ep.liquid + '(self.net, self.expParams, p.get("liquid",{}))')
m.input = eval(ep.input + '(self.net, self.expParams, p.get("input",{}), depModels = m.liquid)')
ep.samplingTime = int(ep.Tsim / (200 * ep.DTsim))
m.liquid.generate()
m.input.generate()
def reset(self):
self.net.reset()
def setupRecordings(self):
r = self.recordings
r.input = self.models.input.setupRecordings()
r.liquid = self.models.liquid.setupRecordings()
return r
def getOutput(self):
out = pcsim.Dictionary()
r = self.recordings
net = self.net
out.exc_spikes = [ array(r.liquid.exc_spikes.object(i).getRecordedValues()) for i in range(r.liquid.exc_spikes.size()) ]
out.inh_spikes = [ array(r.liquid.inh_spikes.object(i).getRecordedValues()) for i in range(r.liquid.inh_spikes.size()) ]
out.numSynapses = [r.liquid.numSynapses]
input = [ array(r.input.input.object(i).getRecordedValues()) for i in range(r.input.input.size()) ]
return out,input
def simulate(self):
ep = self.expParams
ep.samplingTime = int(ep.Tsim / (200 * ep.DTsim))
ep.Tsim = ep.trialT
t0=datetime.today()
self.net.advance(int(ep.Tsim/ep.DTsim))
t1=datetime.today()
print 'Done.', (t1-t0).seconds, 'sec CPU time for', ep.Tsim, 's simulation time';
self.expParams.simDuration = (t1 - t0).seconds
def scriptList(self):
return ["Liquid400Experiment.py"]
print "__name__ =" , __name__
if __name__ == "__main__":
exper = Liquid400Experiment('test', experParams = {})
exper.setup()
exper.models.input.resetStimulus((1,1,1))
exper.run('shortrun', saveData = False)
print exper.getOutput()