import numpy
from scipy.interpolate.interpolate import interp1d
from randombndrate import *
class RandomModRate(RandomBndRate):
'''genarates spike trains with a rate modulated by a sinusoidal rate r(t) whose frequency is drawn randomly'''
def __init__(self, **kwds):
''' nChannels ... number of spike trains (channels)
Tstim ... length of spike trains
dt ... time step for rate calculation
nRates ... number of different rates that can be chosen (equal spaced in the interval [0,fmax]
binwidth ... in each interval of length binwidth a new random rate is drawn
freq ... frequency od the underlying signal
fmax ... maximal rate of a single channel
fmin ... minimal rate of a single channel
'''
super(RandomModRate, self).__init__(**kwds)
self.freq = kwds.get('freq', 40.0) # minimal rate of a single channel
def __str__(self):
desc = ''' RANDOM MOD RATE
nChannels : %s
Tstim : %s
nRates : %s
binwidth : %s
freq : %s
fmin : %s
fmax : %s
dt : %s
''' % (self.nChannels, self.Tstim, self.nRates, self.binwidth, self.freq, self.fmin, self.fmax, self.dt)
return desc
def calcRate(self):
tt=numpy.arange(0, self.Tstim, self.dt)
t=numpy.arange((-self.binwidth/2), self.Tstim+self.binwidth, self.binwidth)
nSegment=numpy.round(self.Tstim/self.binwidth)
ttseg=numpy.arange(0, self.binwidth-self.dt/2, self.dt)
r=[]; t=[]
for nS in range(nSegment+1):
if self.nRates == numpy.inf:
f=numpy.random.uniform(0, (self.fmax-self.fmin)) + self.fmin
else:
f=numpy.floor(numpy.random.uniform(0, self.nRates+1))/self.nRates*(self.fmax-self.fmin) + self.fmin
pr = numpy.sin(f*ttseg*2*numpy.pi)
r = numpy.r_[r, pr]
t = numpy.r_[t, (ttseg + nS*self.binwidth)]
r=interp1d(t, self.freq*r/2 + self.freq/2, 'linear')
return r(tt)
if __name__ == '__main__':
import pylab
rrate = RandomModRate(Tstim=1.0, fmin=20.0, fmax=40.0)
rrate2 = RandomModRate(Tstim=1.0, fmin=40.0, fmax=80.0)
rrate.plot()
rrate2.plot()
# stim = rrate.generate()
# stim2 = rrate2.generate()
# rrate.plot(stim)
# rrate2.plot(stim2)
pylab.show()