/*---------------------------------------------------------------- %W% %G% mp.ma.032685.gc.asc translated Tue Jul 11 12:21:27 1995 by ntscable 2.0 source file syntax: Eutectic output file syntax: CABLE soma: diameter = 13.3587 um length = 26.405 um area = 1108.15 um2 11 three-D points; 14 outline points numbered 1-14 outline diameter = 18.8476 um 6 primary neurites 30 branches totaling 4250.69 um in length, 5621.81 um2 in area 940 tree points translated to 454 segments (1 requested) Neurites divided into segments of equal dx between adjacent digitized branch points. Segment length constrained to be < 10 um. No. points 954 No. trees 7 Text 3/26/85-intra-1250x oil-great stain-SUST ON ----------------------------------------------------------------*/ /* create sections */ create soma,\ dend1[23],\ dend2[15],\ dend3[3],\ dend4[1],\ dend5[3],\ dend6[9] /*----------------------------------------------------------------*/ proc geometry() { local i, j /* soma geometry */ soma { nseg = 1 pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } /* connect primary neurites */ soma connect dend1[0] (0), 0.5 soma connect dend2[0] (0), 0.5 soma connect dend3[0] (0), 0.5 soma connect dend4[0] (0), 0.5 soma connect dend5[0] (0), 0.5 soma connect dend6[0] (0), 0.5 /* neurite geometry*/ for i = 0,22 { dend1[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,14 { dend2[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,2 { dend3[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,0 { dend4[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,2 { dend5[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } for i = 0,8 { dend6[i] { nseg = fscan() pt3dclear() for j = 1, fscan() { pt3dadd(fscan(),fscan(),fscan(),fscan()) } } } /* branching topology*/ for i = 1,22 { dend1[fscan()] connect dend1[i] (0), fscan() } for i = 1,14 { dend2[fscan()] connect dend2[i] (0), fscan() } for i = 1,2 { dend3[fscan()] connect dend3[i] (0), fscan() } for i = 1,0 { dend4[fscan()] connect dend4[i] (0), fscan() } for i = 1,2 { dend5[fscan()] connect dend5[i] (0), fscan() } for i = 1,8 { dend6[fscan()] connect dend6[i] (0), fscan() } } geometry() SOMA COORDINATES AND DIAMETERS: 11 -8.5 8.5 1 0 -8.5 7.25 1.5 2.6926 -6.5 5.6667 1.25 7.3504 -3 0.89583 0.75 19.798 -2.5 0.85 0.35 20.342 -0.5 0.25 -1.25 21.966 0 0.23214 -1.25 22.001 2 -0.58929 -2 20.4 6.5 -3.25 -1.75 15.89 9 -3.25 -1.5 5.5 9 -0.5 -1.5 0 NEURITE COORDINATES AND DIAMETERS: 2 4 -2.5 6.5 -6.5 1.5 -2 9 -9 1.1 -7 10 -9 1.1 -9.5 12.5 -10 1.1 4 7 -9.5 12.5 -10 1.1 -16 13.5 -12 0.8 -22 17.5 -10 0.8 -26 20.5 -7.5 0.8 -27.5 25.5 -3 0.8 -32.5 27.5 2.5 1.7 -35 28.5 3.5 1.7 1 2 -35 28.5 3.5 1.7 -40.5 29.5 3 1.7 1 3 -40.5 29.5 3 1.7 -42 28.5 2 1.2 -44.5 28 2 1.4 13 23 -44.5 28 2 1.4 -45.5 25.5 2 0.7 -48 23 2 0.7 -51.5 21 0.5 0.7 -52.5 19.5 1 0.7 -54 15.5 0.5 0.5 -55.5 13 -1.5 0.4 -57.5 8 -9 0.4 -62 6.5 -10.5 0.4 -68 7 -10 0.4 -74 2 -10.5 0.4 -80.5 -1.5 -10.5 0.4 -82.5 -5 -12.5 0.4 -86.5 -8.5 -12.5 0.4 -89.5 -14 -12.5 0.4 -91.5 -18.5 -12 0.4 -97.5 -26.5 -11 0.4 -102.5 -34 -14.5 0.4 -108 -40.5 -14 0.4 -110 -47 -11.5 0.3 -108.5 -53 -7.5 0.3 -110 -56 -7.5 0.3 -111.5 -59.5 -7.5 0.3 21 38 -44.5 28 2 1.4 -44.5 28 0.5 0.4 -47.5 28.5 0.5 0.7 -51 28.5 0.5 0.7 -56 29.5 0.5 0.7 -63 31.5 1.5 0.7 -67 31 2 0.6 -70.5 30.5 0 0.5 -77 34 1 0.5 -84 38 1 0.5 -88 46.5 1 0.5 -92.5 49.5 3.5 0.5 -99.5 53 1.5 0.6 -102 56 -1.5 0.5 -106 58 -3 0.5 -111.5 59 -0.5 0.5 -115.5 61 -2.5 0.4 -122 62.5 -2.5 0.4 -126 67 -5.5 0.3 -128.5 67.5 -5.5 0.3 -131.5 67.5 -5.5 0.3 -136 70.5 -5 0.3 -142 70 -4 0.3 -146.5 70.5 -3 0.3 -152 70 -2.5 0.3 -159 71.5 -2.5 0.3 -164.5 68.5 -4.5 0.5 -169.5 63.5 -10 0.3 -174 63 -11 0.3 -178.5 62 -11.5 0.3 -183.5 60 -10.5 0.3 -187.5 58.5 -10.5 0.3 -191 59 -10.5 0.3 -197 58.5 -11 0.3 -200.5 58.5 -11 0.3 -205.5 58.5 -11 0.3 -209 54.5 -12 0.3 -215.5 54.5 -12.5 0.3 4 11 -40.5 29.5 3 1.7 -39 31 1.5 0.5 -42 32.5 2 0.5 -47.5 36.5 1.5 0.3 -50.5 40.5 1.5 0.3 -55 44.5 1 0.3 -60.5 48 1 0.5 -63 50.5 2 0.5 -64 53 1 0.3 -64.5 55 2 0.2 -64.5 55 1.5 0.2 10 21 -35 28.5 3.5 1.7 -31.5 31 3.5 0.3 -30 32 3 0.7 -31 37.5 3 0.5 -33 40.5 3 0.5 -32.5 44 3 0.5 -35 47 4 0.5 -36 49.5 3.5 0.5 -37 54 3 0.5 -41.5 60.5 1 0.5 -43.5 63 1.5 0.5 -46.5 66.5 0 0.5 -50 75 -2 0.4 -52.5 79.5 -3.5 0.4 -55.5 83 -4.5 0.4 -62.5 86 -4 0.4 -67 89.5 -3 0.4 -69.5 94.5 -3 0.4 -72.5 98.5 -5 0.4 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0.2 200 -45.5 -5 0.2 201.5 -48 -5.5 0.2 204.5 -48.5 -6.5 0.2 206.5 -50 -6.5 0.2 209 -54.5 -7 0.4 212 -55.5 -9.5 0.3 215 -61 -7.5 0.3 220 -63 -8.5 0.3 224 -63.5 -10 0.3 2 5 104.5 -9.5 -7.5 0.7 100 -12.5 -8 0.3 102.5 -14 -8 0.3 104.5 -17 -8.5 0.3 109 -19.5 -6.5 0.3 CONNECTIONS: 0 1 1 1 2 1 3 1 3 1 2 1 1 1 7 1 7 1 0 1 10 1 11 1 12 1 12 1 11 1 15 1 15 1 17 1 17 1 10 1 20 1 20 1 0 1 1 1 1 1 3 1 4 1 5 1 5 1 4 1 3 1 0 1 10 1 11 1 11 1 10 1 0 1 0 1 0 1 0 1 0 1 1 1 2 1 2 1 1 1 0 1 6 1 6 1 /*----------------------------------------------------------------*/ proc geometry() { /* NULL geometry procedure: keeps the user from calling the geometry procedure in isolation. */ printf("\nYou must re-read the entire geometry\n") printf("file to execute geometry().\n\n") }