//%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
//
// NOTICE OF COPYRIGHT AND OWNERSHIP OF SOFTWARE
//
// Copyright 2010, The University Of Michigan
// 	
//   All rights reserved.
//   For research use only; commercial use prohibited.
//   No Distribution without permission of William Stacey
//   wstacey@umich.edu
//
//%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

// Definition of the cellular properties in the network
begintemplate CellParam

public name, N, iappSl, iappSh, iappSsd, iappAl, iappAh, iappAsd, iappUnits 

strdef name

proc init() {
	
	name      = $s1// Name of the cell, e.g. Pyr
	N         = $2 // Number of the cells in the network
	iappSl    = $3 // The lowest value for the somatic injected curreent (over the population)
	iappSh    = $4 // The highest value for the somatic injected curreent (over the population)
	iappSsd   = $5 // Standard Deviation of the somatic injected curreent (for one cell)
	iappAl    = $6 // apical
	iappAh    = $7 // apical
	iappAsd   = $8 // apical
	iappUnits = $9 // Units 0-pA 1-uA/cm2
	
	//print $s1, $2, $3, $4, $5, $6, $7, $8, $9
}

endtemplate CellParam

// TEMPLATE
begintemplate CellParamSet

public cellSet
objref cellSet
strdef name, tmpstr, tmpstr2

proc init() { local N localobj fo, strFun

	N         = 0	
	iappSl    = 0
	iappSh    = 0
	iappSsd   = 0
	iappAl    = 0
	iappAh    = 0
	iappAsd   = 0
	iappUnits = 0
	
	cellSet  = new List()
	strFun   = new StringFunctions()
	
	// READ cells
	fo = new File("parameters/cells.par")
	fo.ropen()
	
	while(!fo.eof()) {
	
		fo.gets(tmpstr)
		
		// Find in tmpstr all that follows non-blank character, and store it in tmpstr2
		strFun.tail(tmpstr, "[^\t]", tmpstr2)
		
		// Remove end of the line
		strFun.head(tmpstr2, "\n", tmpstr2)
		
		// Process data if nonepty line
		if (strFun.len(tmpstr2)>0 && strFun.substr(tmpstr, "//")==-1) {
			
			sscanf(tmpstr, "%[^,], %d, %lf, %lf, %lf, %lf, %lf, %lf, %d\n", name, &N,	&iappSl, &iappSh, &iappSsd, &iappAl, &iappAh, &iappAsd, &iappUnits)
			cellSet.append(new CellParam( name, N, iappSl, iappSh, iappSsd, iappAl, iappAh, iappAsd, iappUnits) )
		}
	}
		
	fo.close()
}
	
endtemplate CellParamSet