#!/bin/bash # (c) 2016 - Ilya Prokin - isprokin@gmail.com - https://sites.google.com/site/ilyaprokin # INRIA Rhone-Alpes # STDP model : script to compile model with gfortran and f2py LODEFOLDER='./odepack' F2PY='python2 f2py2.py' NAME="solve_py" #compile odepack cd $LODEFOLDER for FILE in `ls -1 *.f`; do gfortran -c -Ofast -fPIC $FILE if [ $? -ne 0 ]; then echo "Errors compiling " $FILE exit fi done ar qc libodepack.a *.o rm *.o cd - #compile python module linking it with lodepack $F2PY -L$LODEFOLDER -lodepack -c --f90flags='-ffree-form -ffree-line-length-none' --fcompiler=gnu95 --opt='-Ofast' solve_py.pyf general_math.f95 statevars_mod.f95 pars_mod.f95 ghk_flux.f95 caL13.f95 TRPV1.f95 subcellular.f95 CaMKII_plast.f95 AMPA.f95 NMDA.f95 CB1R.f95 qsort_c_module.f95 stims.f95 comp_part.f95 solve_py.f95 > mp.txt 2>&1 #remove libodepack after it is linked rm $LODEFOLDER/libodepack.a echo "----------------------" echo "Checking for errors..." echo "----------------------" ERRS=`grep -i "err" -C 1 mp.txt` if [ -z "$ERRS" ]; then echo "no errors found" else echo $ERRS echo '- - - - - - - - - - - - - - -' echo 'for details check file mp.txt' fi