begintemplate AACell
public is_art
public init, topol, basic_shape, subsets, geom, biophys
public pre_list, connect2target
public soma, radT2, radM2, radt2, lmM2, lmt2, radT1
public radM1, radt1, lmM1, lmt1, oriT1, oriM1, orit1
public oriT2, oriM2, orit2
public all
objref pre_list
proc init() {
topol()
subsets()
geom()
biophys()
geom_nseg()
pre_list = new List()
synapses()
}
create soma, radT2, radM2, radt2, lmM2, lmt2, radT1
create radM1, radt1, lmM1, lmt1, oriT1, oriM1, orit1
create oriT2, oriM2, orit2
proc topol() { local i
connect radT2(0), soma(1)
connect radM2(0), radT2(1)
connect radt2(0), radM2(1)
connect lmM2(0), radt2(1)
connect lmt2(0), lmM2(1)
connect radT1(0), soma(0)
connect radM1(0), radT1(1)
connect radt1(0), radM1(1)
connect lmM1(0), radt1(1)
connect lmt1(0), lmM1(1)
connect oriT1(0), soma(0)
connect oriM1(0), oriT1(1)
connect orit1(0), oriM1(1)
connect oriT2(0), soma(1)
connect oriM2(0), oriT2(1)
connect orit2(0), oriM2(1)
}
proc basic_shape() {
soma {pt3dclear() pt3dadd(0, 0, 0, 1) pt3dadd(15, 0, 0, 1)}
radT2 {pt3dclear() pt3dadd(15, 0, 0, 1) pt3dadd(45, 30, 0, 1)}
radM2 {pt3dclear() pt3dadd(45, 30, 0, 1) pt3dadd(75, 60, 0, 1)}
radt2 {pt3dclear() pt3dadd(75, 60, 0, 1) pt3dadd(90, 75, 0, 1)}
lmM2 {pt3dclear() pt3dadd(90, 75, 0, 1) pt3dadd(105, 90, 0, 1)}
lmt2 {pt3dclear() pt3dadd(105, 90, 0, 1) pt3dadd(120, 105, 0, 1)}
radT1 {pt3dclear() pt3dadd(0, 0, 0, 1) pt3dadd(-14, 15, 0, 1)}
radM1 {pt3dclear() pt3dadd(-14, 15, 0, 1) pt3dadd(-29, 30, 0, 1)}
radt1 {pt3dclear() pt3dadd(-29, 30, 0, 1) pt3dadd(-44, 45, 0, 1)}
lmM1 {pt3dclear() pt3dadd(-44, 45, 0, 1) pt3dadd(-59, 60, 0, 1)}
lmt1 {pt3dclear() pt3dadd(-59, 60, 0, 1) pt3dadd(-89, 90, 0, 1)}
oriT1 {pt3dclear() pt3dadd(0, 0, 0, 1) pt3dadd(-29, -29, 0, 1)}
oriM1 {pt3dclear() pt3dadd(-29, -29, 0, 1) pt3dadd(-59, -59, 0, 1)}
orit1 {pt3dclear() pt3dadd(-59, -59, 0, 1) pt3dadd(-89, -89, 0, 1)}
oriT2 {pt3dclear() pt3dadd(15, 0, 0, 1) pt3dadd(45, -29, 0, 1)}
oriM2 {pt3dclear() pt3dadd(45, -29, 0, 1) pt3dadd(75, -59, 0, 1)}
orit2 {pt3dclear() pt3dadd(75, -59, 0, 1) pt3dadd(105, -89, 0, 1)}
}
objref all
proc subsets() { local i
objref all
all = new SectionList()
soma all.append()
radT2 all.append()
radM2 all.append()
radt2 all.append()
lmM2 all.append()
lmt2 all.append()
radT1 all.append()
radM1 all.append()
radt1 all.append()
lmM1 all.append()
lmt1 all.append()
oriT1 all.append()
oriM1 all.append()
orit1 all.append()
oriT2 all.append()
oriM2 all.append()
orit2 all.append()
}
proc geom() {
forsec all { }
soma { L = 20 diam = 10 }
radT2 { L = 100 diam = 4 }
radM2 { L = 100 diam = 3 }
radt2 { L = 200 diam = 2 }
lmM2 { L = 100 diam = 1.5 }
lmt2 { L = 100 diam = 1 }
radT1 { L = 100 diam = 4 }
radM1 { L = 100 diam = 3 }
radt1 { L = 200 diam = 2 }
lmM1 { L = 100 diam = 1.5 }
lmt1 { L = 100 diam = 1 }
oriT1 { L = 100 diam = 2 }
oriM1 { L = 100 diam = 1.5 }
orit1 { L = 100 diam = 1 }
oriT2 { L = 100 diam = 2 }
oriM2 { L = 100 diam = 1.5 }
orit2 { L = 100 diam = 1 }
}
external lambda_f
proc geom_nseg() {
forsec all { nseg = int((L/(0.1*lambda_f(100))+.9)/2)*2 + 1 }
}
proc biophys() {
gna = 0.15
soma {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
lmt1 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
lmt2 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
lmM1 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
lmM2 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
radt1 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
radt2 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
radM1 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
radM2 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
radT1 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
radT2 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
oriT1 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
oriT2 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
oriM1 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
oriM2 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
orit1 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
orit2 {
insert ichan2
gnatbar_ichan2 = gna
gkfbar_ichan2 = 0.013
gl_ichan2 = 0.00018
cm=1.4
}
forsec all {
insert ccanl
catau_ccanl = 10
caiinf_ccanl = 5.e-6
insert borgka
gkabar_borgka = 0.00015
insert nca
gncabar_nca = 0.0008
insert lca
glcabar_lca = 0.005
insert gskch
gskbar_gskch = 0.000002
insert mykca
gkbar = 0.0002
Ra = 100
enat = 55
ekf = -90
ek = -90
elca = 130
esk = -90
el_ichan2 = -60
cao_ccanl = 2
}
}
obfunc connect2target() { localobj nc
soma nc = new NetCon(&v(1), $o1)
nc.threshold = -10
if (numarg() == 2) { $o2 = nc }
return nc
}
objref syn_
proc synapses() {
lmM1 syn_ = new MyExp2Syn(0.5) pre_list.append(syn_)
syn_.tau1 = 0.5
syn_.tau2 = 3
syn_.e = 0
lmM2 syn_ = new MyExp2Syn(0.5) pre_list.append(syn_)
syn_.tau1 = 0.5
syn_.tau2 = 3
syn_.e = 0
radM1 syn_ = new MyExp2Syn(0.5) pre_list.append(syn_)
syn_.tau1 = 0.5
syn_.tau2 = 3
syn_.e = 0
radM2 syn_ = new MyExp2Syn(0.5) pre_list.append(syn_)
syn_.tau1 = 0.5
syn_.tau2 = 3
syn_.e = 0
radT1 syn_ = new MyExp2Syn(0.5) pre_list.append(syn_)
syn_.tau1 = 0.5
syn_.tau2 = 3
syn_.e = 0
radT2 syn_ = new MyExp2Syn(0.5) pre_list.append(syn_)
syn_.tau1 = 0.5
syn_.tau2 = 3
syn_.e = 0
oriT1 syn_ = new MyExp2Syn(0.5) pre_list.append(syn_)
syn_.tau1 = 0.5
syn_.tau2 = 3
syn_.e = 0
oriT2 syn_ = new MyExp2Syn(0.5) pre_list.append(syn_)
syn_.tau1 = 0.5
syn_.tau2 = 3
syn_.e = 0
soma syn_ = new MyExp2Syn(0.5) pre_list.append(syn_)
syn_.tau1 = 1
syn_.tau2 = 8
syn_.e = -75
soma syn_ = new MyExp2Syn(0.6) pre_list.append(syn_)
syn_.tau1 = 1
syn_.tau2 = 8
syn_.e = -75
oriT1 syn_ = new MyExp2Syn(0.6) pre_list.append(syn_)
syn_.tau1 = 1
syn_.tau2 = 8
syn_.e = -75
oriT2 syn_ = new MyExp2Syn(0.6) pre_list.append(syn_)
syn_.tau1 = 1
syn_.tau2 = 8
syn_.e = -75
oriT1 syn_ = new MyExp2Syn(0.6) pre_list.append(syn_)
syn_.tau1 = 35
syn_.tau2 = 100
syn_.e = -75
oriT2 syn_ = new MyExp2Syn(0.6) pre_list.append(syn_)
syn_.tau1 = 35
syn_.tau2 = 100
syn_.e = -75
}
func is_art() { return 0 }
endtemplate AACell