// genesis 2.2
// Kerstin Menne
// Medical University of Luebeck, 17.12.2001
// cell parameter file for the 1994 Traub CA3 hippocampal cell
// "phi" parameter reduced by e-3
// addition of synaptically activated channels;
// distribution of synapses taken from
// Cellular mechanisms of 4-aminopyridine-induced synchronized after-
// discharge in the rat hippocampal slice, Traub et al., 1995, Journal of
// Physiology, 489.1, pp.127-140
*cartesian
*relative
*asymmetric
*set_compt_param RM 5.0 // ohm*m^2
*set_compt_param RA 2.0 // ohm*m
*set_compt_param CM 0.0075 // F/m^2
// The format for each compartment parameter line is :
// name parent x y z d ch dens ...
// For channels, "dens" = maximum conductance per unit area of compartment
// The compartment numbering corresponds to that in the paper, with soma = 4
*spherical
soma none 0 0 25.5 30.0 Ca_concs -24.0e12 Na 1000 Ca 10 K_DR 1350 K_AHPs 8 K_Cs 200 K_A 5
*set_compt_param RM 2.5 // ohm*m^2
*set_compt_param CM 0.0150 // F/m^2
*cylindrical
ap5 soma 0 0 50 10.0 Ca_conc -18.0e12 Na 60 Ca 20 K_DR 100 K_AHP 16 K_C 160 K_A 10
ap6_1 ap5 -35.36 0 35.36 6.30 Ca_conc -29.0e12 Na 60 Ca 20 K_DR 400 K_AHP 16 K_C 160 K_A 10
ap6_2 ap5 35.36 0 35.36 6.30 Ca_conc -29.0e12 Na 60 Ca 20 K_DR 400 K_AHP 16 K_C 160 K_A 10
ap7_1 ap6_1 0 15 68.37 2.78 Ca_conc -47.0e12 Na 0 Ca 40 K_DR 0 K_AHP 16 K_C 80 K_A 0 20
ap7_4 ap6_2 0 -15 68.37 2.78 Ca_conc -47.0e12 Na 0 Ca 40 K_DR 0 K_AHP 16 K_C 80 K_A 0 20
ap7_2 ap6_1 0 -20 45.83 5.00 Ca_conc -37.0e12 Na 0 Ca 40 K_DR 0 K_AHP 16 K_C 80 K_A 0 20
ap7_3 ap6_2 0 20 45.83 5.00 Ca_conc -37.0e12 Na 0 Ca 40 K_DR 0 K_AHP 16 K_C 80 K_A 0 20
ap8_1 ap7_2 0 -13 58.57 3.14 Ca_conc -13.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap8_2 ap7_2 -13 0 58.57 3.14 Ca_conc -13.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap8_3 ap7_3 0 13 58.57 3.14 Ca_conc -13.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap8_4 ap7_3 13 0 58.57 3.14 Ca_conc -13.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap9_1 ap8_1 0 -35.36 35.36 1.40 Ca_conc -34.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap9_4 ap8_2 -35.36 0 35.36 1.40 Ca_conc -34.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap9_5 ap8_3 0 35.36 35.36 1.40 Ca_conc -34.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap9_8 ap8_4 0 35.36 35.36 1.40 Ca_conc -34.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap9_2 ap8_1 0 -40 44.72 2.50 Ca_conc -16.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap9_3 ap8_2 0 40 44.72 2.50 Ca_conc -16.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap9_6 ap8_3 0 0 60 2.50 Ca_conc -16.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap9_7 ap8_4 0 -40 44.72 2.50 Ca_conc -16.0e12 Na 0 Ca 60 K_DR 0 K_AHP 16 K_C 240 K_A 0
ap10_1 ap9_2 -42.43 0 42.43 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap10_2 ap9_2 42.43 0 42.43 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap10_3 ap9_3 -42.43 0 42.43 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap10_4 ap9_3 42.43 0 42.43 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap10_5 ap9_6 0 -42.43 42.43 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap10_6 ap9_6 0 42.43 42.43 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap10_7 ap9_7 -42.43 0 42.43 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap10_8 ap9_7 42.43 0 42.43 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap11_1 ap10_1 0 0 60 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap11_2 ap10_2 0 0 60 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap11_3 ap10_3 0 0 60 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap11_4 ap10_4 0 0 60 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap11_5 ap10_5 0 0 60 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap11_6 ap10_6 0 0 60 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap11_7 ap10_7 0 0 60 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
ap11_8 ap10_8 0 0 60 1.60 Ca_conc -25.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas3_1 soma -15 0 0 5.00 Ca_conc -123.0e12 Na 20 Ca 20 K_DR 300 K_AHP 16 K_C 160 K_A 10
bas3_2 soma 0 -11.18 -10 5.00 Ca_conc -123.0e12 Na 20 Ca 20 K_DR 300 K_AHP 16 K_C 160 K_A 10
bas3_3 soma 0 11.18 -10 5.00 Ca_conc -123.0e12 Na 20 Ca 20 K_DR 300 K_AHP 16 K_C 160 K_A 10
bas3_4 soma 15 0 0 5.00 Ca_conc -123.0e12 Na 20 Ca 20 K_DR 300 K_AHP 16 K_C 160 K_A 10
bas2_1 bas3_1 0 -19.37 -35 3.14 Ca_conc -164.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 10
bas2_2 bas3_1 0 35 -19.37 3.14 Ca_conc -164.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 1
bas2_3 bas3_2 0 -19.37 -35 3.14 Ca_conc -164.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 10
bas2_4 bas3_2 0 0 -40 3.14 Ca_conc -164.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 10
bas2_5 bas3_3 0 0 -40 3.14 Ca_conc -164.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 10
bas2_6 bas3_3 0 19.37 -35 3.14 Ca_conc -164.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 10
bas2_7 bas3_4 0 35 -19.37 3.14 Ca_conc -164.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 10
bas2_8 bas3_4 0 -35 -19.37 3.14 Ca_conc -164.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 10
bas1_1 bas2_1 -36.06 0 -60 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_2 bas2_1 0 0 -70 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_3 bas2_2 0 0 -70 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_4 bas2_2 0 -60 -36.06 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_5 bas2_3 0 60 -36.06 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_6 bas2_3 0 0 -43.6 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_7 bas2_4 0 26 -35 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_8 bas2_4 0 0 -70 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_9 bas2_5 0 36.06 -60 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_10 bas2_5 -26 0 -35 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_11 bas2_6 -26 0 -35 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_12 bas2_6 60 0 -36.06 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_13 bas2_7 60 0 -36.06 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_14 bas2_7 0 0 -70 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_15 bas2_8 0 0 -70 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
bas1_16 bas2_8 0 -36.06 -60 2.00 Ca_conc -148.0e12 Na 0 Ca 20 K_DR 0 K_AHP 16 K_C 80 K_A 0
*set_compt_param CM 0.0075 //F/m^2
*set_compt_param RM 0.1 //ohm*m^2
*set_compt_param RA 1.0
axonIS soma 0 53 53 4.00 NaA 5000 K_DRA 2500
*set_compt_param CM 0.0075 //F/m^2
*set_compt_param RM 0.1 //ohm*m^2
*set_compt_param RA 1.0
ax axonIS 40 0 63.44 1.00 NaA 5000 K_DRA 2500 pyr_spikegen -0.03