import matplotlib.pyplot as plt
import os
from helpers.plotter import DoublePlotter, StimulPlotter
import neuronvisio.manager
filename = 'storage.h5'
stimulated_spines = ['spine554', 'spine555', 'spine556',
'spine558', 'spine559', 'spine560',
'spine562', 'spine563', 'spine564',
'spine1468', 'spine1469', 'spine1470',
'spine1472', 'spine1473', 'spine1474',
'spine1476', 'spine1477', 'spine1478']
#stimulated_spines = ['spine554']
dirs = {'cpm_8Hz' : 'Data_rmt/30-04-2011/Sim_0/',
'cpm_20Hz' : 'Data_rmt/29-04-2011/Sim_2/',
'cpm_40Hz' : 'Data_rmt/29-04-2011/Sim_1/',
'cpm_50Hz' : 'Data_rmt/29-04-2011/Sim_0/',
'cpm_40Hz_long' : 'Data_rmt/25-06-2011/Sim_0/',
}
def plotting(fig_fil):
pass
for condition, dir in dirs.iteritems():
h5_filename = dir + 'storage.h5'
neuronvisio.manager = reload(neuronvisio.manager)
name = 'ele_bio_' + condition + "_" + 'spine1478' + '.png'
if not os.path.exists(os.path.join(dir, name)):
man = neuronvisio.manager.Manager()
man.load_from_hdf(h5_filename)
dp = DoublePlotter()
sp = StimulPlotter()
for spine_num in stimulated_spines:
name = None
fig_filename = None
name = 'ele_bio_' + condition + "_" + spine_num + '.png'
fig_filename = os.path.join(dir, name)
if not os.path.exists(fig_filename):
biogroup = 'timeSeries_' + spine_num
fig = plt.figure()
ax1, ax2 = dp.plot_double_axes(man, spine_num, 'v',
'AMPAR_P', bio_group=biogroup)
ax1.set_ylim(-90, 0)
ax2.set_ylim(10, 150) # make space for the legend.
sp.plot_input(spine_num, man, ax=ax1)
for ext in ['.png', '.pdf']:
name = 'ele_bio_' + condition + "_" + spine_num + ext
fig_filename = os.path.join(dir, name)
plt.savefig(fig_filename)
print "Saved file %s" %fig_filename
else:
print "File %s exist. Skipping" %fig_filename
del man
else:
print "Skipping dir %s" %dir