//Template for the detailed  FS Somogyi_23!
	//Alexandra Tzilivaki  


	begintemplate FScell 
	external v_init
	objref unscrProx, unscrDist
	objref all, somatic, axonal, basal_prox, basal_dist
	//Public members need to be declared afterwards:
	public soma, axon, dend 
	public init //enables the init() to be called again after object is created!
	public all, somatic, axonal, basal_prox, basal_dist
	public dendproxNo, denddistNo
	public unscrProx, unscrDist
	//Initial creation necessary (segmentation violation error otherwise):
	create soma, axon, dend


	proc init () {
		print "Opening gjhui",  $s1
	//The right amount of compartments is declared per object instance inside
	//the loaded morphology script:
		xopen($s1) // !! 

		dendproxNo=0
		denddistNo=0
	//Create public members for the number of proximal (distal) dendrites,
	//accessible through dot notation (i.e. myFS.dendproxNo):
		forsec basal_prox dendproxNo = dendproxNo + 1
		forsec basal_dist denddistNo = denddistNo + 1

	//Define electrophysiological properties:
		//..........................................................................................................................................................................
		soma_Nafin= 0.045/*//*0.025//0.060*3*/                                      
		soma_kdrin=0.018*2//*0.028//0.0018*2
		soma_Kslowin=0.000725/*//*0.1//*0.00006*0.1//0.000725*0.1 //*0.1 9/12/15*/
		soma_hin=0.00001/*//*10//*100//*100//*100//*/                                                    
		soma_kapin=0.0032//*2//*0.1//*2//*0.001
		soma_can=0.0003//*2 alexandra 17/12/2015
		soma_cat=0.001*2 //for dends
		soma_kctin=0.0001//*10//100//*100//*10                   
		soma_kcain=20*0.001//..001//0.5//*0   
		               
		//...........................................................................................................................................................................

		forsec somatic {
		
		        nseg= 5 //1 12/16
			insert pas
			cm=1.2//microF/cm2
			g_pas =1/7600                               
			e_pas = v_init
			Ra=172 //(Noerenberg et al, 2010 PNAS)

		insert Nafx
			gnafbar_Nafx= soma_Nafin*0.8*11

			insert kdrin
			gkdrbar_kdrin= soma_kdrin*1.2

			insert IKsin	
			gKsbar_IKsin= soma_Kslowin

			insert hin
			gbar_hin=soma_hin

			insert kapin
			gkabar_kapin=soma_kapin

			insert kctin
			gkcbar_kctin=soma_kctin

			insert kcain
			gbar_kcain=soma_kcain

		          
		         insert cadynin // cai

		}

			                
		forsec axonal {
		
		        nseg=10          
			insert pas
			cm=1.2
			g_pas =1/281600
			e_pas = v_init
			Ra=172

			insert Nafx
			gnafbar_Nafx=soma_Nafin*0.8*36
						                                                                    
			insert kdrin
			gkdrbar_kdrin=soma_kdrin*4

		}
		      
		forsec basal_prox {
		
		        nseg=5
			insert pas
			cm=1.2//microF/cm2
			g_pas =1/7600  
			e_pas = v_init                                            
			Ra=142

			insert Nafx
			gnafbar_Nafx=soma_Nafin*0.4//*0.8//*1.2

			insert kdrin
			gkdrbar_kdrin=0.018*0.5
                        
                        insert kapin
			gkabar_kapin=soma_kapin*0.2//*1.2                                                       

			insert can 
			gcabar_can = soma_can

			insert cat
			gcatbar_cat=soma_cat*0.1
		  
		        insert cal
		        gcalbar_cal=0.00003   // L type calcium channel

		        insert cadynin
		     
		}


		forsec basal_dist {
		
		        nseg=5
			insert pas
			cm=1.2           //microF/cm2
			g_pas =1/74300 
			e_pas = v_init                                            
			Ra=142

			insert Nafx
			gnafbar_Nafx=soma_Nafin*0.4*0.8//*0.8//*1.2

			insert kdrin
			gkdrbar_kdrin=0.018*0.5                                           
		        
                        insert kadin
                        gkabar_kadin=1.8*0.001      // IA current used in distal regions >100 microns from the soma
		       
            insert cat
			gcatbar_cat=soma_cat*0.1

			insert can
			gcabar_can=soma_can
		    
		        insert cal
		        gcalbar_cal=0.00003 
		          
		       insert cadynin
		       }	
	       
		ko0_k_ion = 3.82   //mM
		ki0_k_ion = 140    //mM  
	
	} //end init()

	endtemplate FScell