#!/usr/bin/env python
"""config-file for Figure 3B"""
# _title_ : config_timing.py
# _author_ : Katharina Anna Wilmes
# _mail_ : katha __at__ bccn-berlin.de
# --Imports--
import os
import gc
import sys
import pickle
import h5py
from time import time
import datetime
import numpy as np
from NeuroTools.parameters import Parameter
#
#param_ranges = {
# 'Input':
# {
# 'freq': ParameterArray(np.arange(10,20,10)),
# },
# 'Synapse':
# {
# 'pos': ParameterArray([1]), #1,3
# 'shunt_pos': ParameterArray([2]), #0,1,2
# 'shunt_weight':ParameterArray(np.arange(0.0,0.1,0.01)),
# 'shunt_delay':ParameterArray(np.arange(-5,5,0.1)),
# 'shunt_reversal':ParameterArray([-73])
# }
#
# }
params = {
'condition':'bAP',
'Input':
{
'freq': Parameter(10),
'wee': Parameter(0.02)
},
'Synapse':
{
'pos': Parameter(1), #3
'distal_weight':Parameter(0.008),
'oblique_weight':Parameter(0.00001),
'basal_weight':Parameter(0.00001),
'syn_type':'additive',
'AP_DELAY':Parameter(0)
},
'shunt':
{
'delay_start':Parameter(-5),
'delay_end':Parameter(5),
'reversal':Parameter(-73),
'shunt_pos': Parameter(2),#0
'tau1':Parameter(0.5),
'tau2':Parameter(5),
'distal_shunt_pos':Parameter(0.9),
'proximal_shunt_pos':Parameter(0.18),
'basal_shunt_pos':Parameter(0.3),
'distal_shunt_compartment':'a',
'proximal_shunt_compartment':'a',
'basal_shunt_compartment':'basal',
},
'STDP':
{
'delta_t': Parameter(0,'ms')
},
'cell':
{
'gsca' : Parameter(1.5),
'git2' : Parameter(0.005),
'gbar_kca' : Parameter(2.5),
},
'sim':
{
'duration' : Parameter(1,'second'),
'v_init': Parameter(-70,'mV'),
'dt': Parameter(0.1,'ms'),
'sim_time':Parameter(100,'ms'),
'celsius': Parameter(30,'C'),
'high_res': True,
'theta':Parameter(1,'1/ms')
},
'plot':
{
'version':Parameter(1),
'path': os.path.expanduser("/scratch/kwilmes/Project1")
}
}