by Ruben A. Tikidji-Hamburyan, Gubbi Govindaiah, William Guido, Matthew T. Colonnese
eLife 2023; 12:e84333. DOI:10.7554/eLife.84333.
For any simulation in this record, one needs
Python(version 3.9.9 and higher) and libraries
cython, numpy, scipy and
matplotlib.
$pip3 install --user numpy scipy matplotlib cythonAdditional libraries:
| Figure 1 | NEURON, pyabf
and inspyred |
| Figure 2,4,5 | NEURON, h5py,
and neurodsp |
To install all libraries for all scripts, use a single command
$pip3 install --user numpy scipy matplotlib cython NEURON pyabf inspyred h5py neurodsp brian2| File or directory | Description |
|---|---|
| TC-fitting | Fitting procedure and associated files for Figure 1 in the manuscript |
| dLGN-network | Thalamic network at P7-P10 for Figures 2, 4, and 5 in the manuscript |
| experimentaldata | an example of a neuron recording and mask file for the optimization as well as Maccione et al. 2014 recording from waverepo repository on GitHub |
| P07-selected-checked-gmin-20220921.json | A reduced, fully validated, and human-evaluated database of 286 models of thalamocortical neurons in visual LGN at P7-P10, enough to reproduce any results in the manuscript |